NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026110

3300026110: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026110 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114514 | Gp0125925 | Ga0209945
Sample NameSalt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size263920637
Sequencing Scaffolds30
Novel Protein Genes32
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
Not Available19
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Pyrstoviridae → Hatrivirus → Hatrivirus HATV31
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halonotius → Halonotius terrestris1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSalt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSouth San Francisco, USA
CoordinatesLat. (o)37.4958Long. (o)-122.1331Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005080Metagenome413Y
F005874Metagenome387Y
F009454Metagenome317Y
F014681Metagenome / Metatranscriptome261Y
F015039Metagenome / Metatranscriptome258Y
F032166Metagenome180Y
F038111Metagenome166N
F043882Metagenome155Y
F056354Metagenome137N
F062489Metagenome130Y
F065465Metagenome127N
F066493Metagenome126Y
F066711Metagenome / Metatranscriptome126Y
F069440Metagenome124Y
F073153Metagenome120N
F075754Metagenome118N
F079661Metagenome115Y
F089905Metagenome108N
F089940Metagenome108Y
F094957Metagenome105N
F097996Metagenome104N
F098766Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209945_1000879All Organisms → Viruses10942Open in IMG/M
Ga0209945_1001252All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria9221Open in IMG/M
Ga0209945_1001829Not Available7586Open in IMG/M
Ga0209945_1002263All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria6751Open in IMG/M
Ga0209945_1013345Not Available2329Open in IMG/M
Ga0209945_1015067All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Pyrstoviridae → Hatrivirus → Hatrivirus HATV32162Open in IMG/M
Ga0209945_1020068All Organisms → Viruses → Predicted Viral1813Open in IMG/M
Ga0209945_1022199All Organisms → cellular organisms → Bacteria1702Open in IMG/M
Ga0209945_1026266All Organisms → Viruses → Predicted Viral1530Open in IMG/M
Ga0209945_1027297Not Available1495Open in IMG/M
Ga0209945_1029936Not Available1411Open in IMG/M
Ga0209945_1032338Not Available1347Open in IMG/M
Ga0209945_1039899All Organisms → Viruses → Predicted Viral1178Open in IMG/M
Ga0209945_1044812Not Available1096Open in IMG/M
Ga0209945_1046868Not Available1065Open in IMG/M
Ga0209945_1051571Not Available1000Open in IMG/M
Ga0209945_1056579Not Available942Open in IMG/M
Ga0209945_1061241All Organisms → Viruses897Open in IMG/M
Ga0209945_1062566All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halonotius → Halonotius terrestris885Open in IMG/M
Ga0209945_1062907Not Available882Open in IMG/M
Ga0209945_1067750Not Available840Open in IMG/M
Ga0209945_1081933Not Available740Open in IMG/M
Ga0209945_1095013Not Available670Open in IMG/M
Ga0209945_1096028Not Available665Open in IMG/M
Ga0209945_1099764Not Available648Open in IMG/M
Ga0209945_1103342Not Available633Open in IMG/M
Ga0209945_1109583Not Available608Open in IMG/M
Ga0209945_1115823Not Available585Open in IMG/M
Ga0209945_1123412All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium559Open in IMG/M
Ga0209945_1133572Not Available529Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209945_1000879Ga0209945_10008793F038111MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ
Ga0209945_1001252Ga0209945_10012526F038111MIHRVPVVNRNDYTIWLENYKNIANFIHAEVYKYNKTTREAFGKDLDKLMDLHQNPLYVLVETDNNKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209945_1001829Ga0209945_10018293F089940MKYIAVFLIVLGLGIISGAETHDWFPMFAAQIALGTATLFSGGLFATLIDTEED
Ga0209945_1002263Ga0209945_100226310F005874MIPTDPPDDELTAEQLYERFDAAVNVTADELREFQDSLYNEAYIESNSEQAQPGDEPLEDAIQLLDTPADEWRDLDDGFNEVDEAEELLDFQRRTQGQIEAQGLGENYLTDARDMTKREAASIRWAIDPDTEREWL
Ga0209945_1013345Ga0209945_10133451F062489MTGPDAIVIREEVTAGPTRRYVYHPLAAGGYERKTQLWRQATDGWHTTGTEVVESLAIDCPEGRR
Ga0209945_1015067Ga0209945_10150675F079661MTNDTTTIEIGTELRDELRKERKPHESSYGDTIERLLGASSGGQLWTEQEIKDIVDRRVEELGGGRR
Ga0209945_1020068Ga0209945_10200686F015039MAVDNTRRIYVTVALEILRDADEQDVVAECDYAFEHTDIVDTEIVGVKETEE
Ga0209945_1022199Ga0209945_10221994F089905MRTVREIEQDIREAEEAQAETEFSSTSWDSLNAEITGLHRELKRATYHWDRLRLCGMMGVDTYTR
Ga0209945_1026266Ga0209945_10262664F079661MSNTTIQIPESVRDELRDERLPHESNYGDTIERLLGDSTGGQLWTEQEIRDMAQQEIEQVTRR
Ga0209945_1027297Ga0209945_10272971F069440YFQTVDLTELDENGKLMYSAKDLVANLSNMGKVVSGLDELEDIVKKQQQQESANRGGVVTNKYSH
Ga0209945_1029936Ga0209945_10299362F066711VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKNYRGVSTFKNLPLSESLEQRLCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFD
Ga0209945_1032338Ga0209945_10323381F089940MKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN
Ga0209945_1039899Ga0209945_10398993F065465MTEDITVVCECDVLDEARSMGYRRYADMPAADIVAAWPVHYTEHGSWDSHILPTLRCLAGYGDRGYGTYQERQDVALIQDGDEADMPADAIILDSSHLLDDIIVSWQDGAHTAVTDTLRQSDEYSLEDIQR
Ga0209945_1044812Ga0209945_10448121F073153MSEQDLPVRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQDMQTELEHIEVRLNTLESRID
Ga0209945_1046868Ga0209945_10468681F038111QHWRRPSPRKPASVLCIGLHYEAMIHRVPVVNKNNYTIWLENYRHIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNSLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209945_1051571Ga0209945_10515711F014681MNFPTNFLRSLKRDCKGMVDLSVVLMIGIAFVGLMVVAYIVWTIDDQLDATGSAANSLANITGGFDDAVNLLLIAVTITILAIAISALLMLRGRT
Ga0209945_1056579Ga0209945_10565793F075754MKYQTDLRWHTPMNPWEPIHVRVDDSSEWYRTQVERGDYLRDTEEDAEMSHREHGLVAEGIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLPPKKEERAKPSTSYYAVVRKHPDYWLIGSINSVRFWYLCDRTRPEWWKEQTYEGGHLTYEHFKQIKTGVGISPPPAIEVFGQG
Ga0209945_1061241Ga0209945_10612412F079661MTKTTIELPESTRDKLKAERKPHESNYGETIERLLGDTSGGSLWTEQEIRDMIEREIEQHARH
Ga0209945_1062566Ga0209945_10625662F098766MSHPRCAICGYEAHGDDHVRVEVERVPPEKPPETYYFHTRCFDRTQAWERDL
Ga0209945_1062907Ga0209945_10629071F056354MIVEVFIALSIVATLITGMAIRGDIPELLGAFVGAVMSIVAAINALDLFVITNSGNVKNLDPQVDIALILLLIFIVNIIFIFDRAFSPGE
Ga0209945_1067750Ga0209945_10677502F097996MAINRDGMHPRYLGWQVDWPIFVKVPFTADGKYWKKSEHFNWAERNLEMKDVASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLKSVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGD
Ga0209945_1073982Ga0209945_10739821F094957LDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDAIEQELTA
Ga0209945_1081933Ga0209945_10819331F038111MIHRAPVVNRDDYTIWLENYRNIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLTESDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209945_1095013Ga0209945_10950131F066493MSQSREWTDGVIDVADELVQEYSAEGAIERLQRRRQTSDDELQARCNEAIAWIRREVQSD
Ga0209945_1096028Ga0209945_10960282F066493MTEQREFDDGLIDVADELVSEHSADGAIDRLQRRRESTRSEDLEARCLEAIAYIRREVQDDT
Ga0209945_1099764Ga0209945_10997641F089905MRTVREIEQDIREAESAQAETEFSSTMWDSLNAEIIGLHAELKRATYHWDRLK
Ga0209945_1103342Ga0209945_11033421F032166EPLEDAIRLLETPADEYRDLDDGFNEVEEAEELLDFQRRTQGQIESQGLGENYLTEARDMTKREAASIRWGIDPDADREWL
Ga0209945_1107350Ga0209945_11073502F043882MGTFYIEYPELAYVHVPRTGMAMKKIIAEWLKPNFLVTDNENWQIDHPHICTVKSYYPSALTFSVVRNPWQRVFSLYKKIRTEGYWLDWNNVSLLDLKPINEWVLEYCDPDIVFEFPRWFTRFTNQLDFINIEGICVDIICKAENLDRDFLSVKEYLGCNAPLPDITNYDH
Ga0209945_1109583Ga0209945_11095833F066493MSQSREWTDGVIDVADELVQEHSAEGAIERLQRRRQTSDDELQARCNEAIAWIRREVQSD
Ga0209945_1115823Ga0209945_11158231F089905IREAESAQAETEFSSTMWDSLNAEIIGLHAELKRATYHWDRLKLCGMMGVDTHPR
Ga0209945_1123412Ga0209945_11234121F009454MPNFEEIEAAILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCLELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPNYWDERLTGNAKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRE
Ga0209945_1133572Ga0209945_11335721F005080MKADKMLMWTVQQNVLLILNSVPVTFVTDPELIRPSIPVMAHSLNQKVVTREAKARKSAAETTGNVQAKVER
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