NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026124

3300026124: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026124 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114514 | Gp0125935 | Ga0209965
Sample NameSalt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size214123628
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
All Organisms → Viruses → Predicted Viral4
Not Available6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSalt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → pond → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth San Francisco, USA
CoordinatesLat. (o)37.4961Long. (o)-122.1331Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032166Metagenome180Y
F038111Metagenome166N
F041612Metagenome159N
F062489Metagenome130Y
F065465Metagenome127N
F066493Metagenome126Y
F066711Metagenome / Metatranscriptome126Y
F085171Metagenome111N
F089940Metagenome108Y
F094957Metagenome105N
F100063Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209965_1000830All Organisms → cellular organisms → Bacteria → Proteobacteria10888Open in IMG/M
Ga0209965_1002759All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae6017Open in IMG/M
Ga0209965_1003686All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria5123Open in IMG/M
Ga0209965_1016475All Organisms → Viruses → Predicted Viral2042Open in IMG/M
Ga0209965_1019771All Organisms → Viruses → Predicted Viral1803Open in IMG/M
Ga0209965_1030400All Organisms → Viruses → Predicted Viral1328Open in IMG/M
Ga0209965_1042239All Organisms → Viruses → Predicted Viral1047Open in IMG/M
Ga0209965_1057181Not Available842Open in IMG/M
Ga0209965_1069459Not Available729Open in IMG/M
Ga0209965_1084152Not Available632Open in IMG/M
Ga0209965_1090705Not Available596Open in IMG/M
Ga0209965_1090962Not Available595Open in IMG/M
Ga0209965_1092375All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium588Open in IMG/M
Ga0209965_1103907All Organisms → Viruses536Open in IMG/M
Ga0209965_1109523Not Available515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209965_1000830Ga0209965_10008301F038111NMIHRVPVVNRNDYTIWLENYKNIANFIHAEVYKYNKTTREAFGKDLDKLMDLHQNPLYVLVETDNNKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV
Ga0209965_1002759Ga0209965_10027595F038111MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNLPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ
Ga0209965_1003686Ga0209965_10036861F100063MSETCEVCGQFTGQTESFDLWIRGLDRRGEGERIETDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTEEVEIDTNSVQLHPITGNHLPESIDGYVIGKID
Ga0209965_1016475Ga0209965_10164753F038111MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREDFGKDLDKLMDLHQNSLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDRIEREVYRLDRRV
Ga0209965_1019771Ga0209965_10197712F066711VAKVIRTRWYSFIGDCYEYHGQDPSSRERTHSDVGWRLRSKNYRGVSTFKNLPLSESLEQRPCPLDERDSGIYILRDSIFPEGFYVGKGKKMHERIWKHGVKLTGTQRWNKAVETTVEFERYRKLREAKGLNTLEDVEIAFWFTDKIDELEDQILGAYTAKYNRTPFCNSAEEAMFEAFD
Ga0209965_1030400Ga0209965_10304001F065465ARSMGYRRYADMPAADIVAAWPVHYTEHGSWDSHILPTLRCLAGYGDRGYGTYQERQDVALIQDGDEADMPADAIILDSSHLLDDIIVSWQDGAHTAVTDTLRQSDEYSLEDIQR
Ga0209965_1042239Ga0209965_10422391F089940YLTLREKLRDFYIMKIISAALIVLGFGIIAGAETHDWFPMFASQIALGTTVLISGGLFATQINNDDEEEEVE
Ga0209965_1057181Ga0209965_10571811F041612VTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPVAVTQQIDPAAHGTVGGAGGVSIETA
Ga0209965_1069459Ga0209965_10694591F089940MDLTVKEKKNYIMKYVAVLLVVLGLAIIVGAEAHDWFPMFITQIALGMTVSFSGILFALQSGIDDDDD
Ga0209965_1081989Ga0209965_10819891F032166DGFNEIEEAEELLDFQRRTQGQIKSQGLGENYLTDERDMTKREAASIRWAIDPDEEREWL
Ga0209965_1084152Ga0209965_10841522F094957EEGNTMKALTGYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGKLTRAEVEERTNTWLDAMTELDKIEQELTA
Ga0209965_1090705Ga0209965_10907051F085171MTHTDLEGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDDLDAAVSVRCVEPHQIVIEARVDLSNVDLEDIDLGVD
Ga0209965_1090962Ga0209965_10909621F066493GGGRMSQSREWTDGVIDVADELVQEHSAEGAIEHLQRRRQTSDDELQARCNEAIAWIRREVQSDD
Ga0209965_1092375Ga0209965_10923752F089940MKYIAAFLIVLGLAIVGGAEAHDWFPMFAAQIALGTVTLFSG
Ga0209965_1103907Ga0209965_11039071F062489MGPDAIIIREDVRDGPTRRIVYHPLTTGGYERREQLWRLSIEGWHTTGTEVVEELAIDAPEGER
Ga0209965_1109523Ga0209965_11095232F066493MTERREFDDGLIDVADELVKEHSADGAIDRLQRRRESTRSEDLEARCLEAIAYIRREVQDDT
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