Sample 3300026140

Overview

Basic Information
IMG/M Taxon OID	3300026140 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125936 \| Ga0209917
Sample Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	242091418
Sequencing Scaffolds	6
Novel Protein Genes	10
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → pond → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.133	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016383	Metagenome / Metatranscriptome	247	Y
F041612	Metagenome	159	N
F043882	Metagenome	155	Y
F089905	Metagenome	108	N
F089940	Metagenome	108	Y
F090210	Metagenome	108	Y
F094957	Metagenome	105	N
F104555	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F016383

Metagenome / Metatranscriptome

247

F041612

Metagenome

159

F043882

Metagenome

155

F089905

Metagenome

108

F089940

Metagenome

108

F090210

Metagenome

108

F094957

Metagenome

105

F104555

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209917_1058350	Not Available	926	Open in IMG/M
Ga0209917_1075021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766	Open in IMG/M
Ga0209917_1091058	Not Available	661	Open in IMG/M
Ga0209917_1095032	Not Available	640	Open in IMG/M
Ga0209917_1096374	Not Available	633	Open in IMG/M
Ga0209917_1100506	Not Available	613	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209917_1058350

Not Available

926

Open in IMG/M

Ga0209917_1075021

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

766

Open in IMG/M

Ga0209917_1091058

Not Available

661

Open in IMG/M

Ga0209917_1095032

Not Available

640

Open in IMG/M

Ga0209917_1096374

Not Available

633

Open in IMG/M

Ga0209917_1100506

Not Available

613

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209917_1046441	Ga0209917_10464411	F043882	MGTFYIEYPELAYVHVPRTGMAMKKIIAEWLKPNFLVTDNENWQIDHPHICTVKSYYPSALTFSVVRNPWQRVFSLYKKIRTEGYWLDWNNVSLLDLKPINEWVLEYCDPDIVFEFPRWFTRFTNQLDFINIEGICVDIICKAENLDRDFLSVKEYLGCNAPLPDITNYDHWEYKKHLNQKSLN
Ga0209917_1058350	Ga0209917_10583501	F094957	MKALTQYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDA
Ga0209917_1061750	Ga0209917_10617503	F090210	SPAKYWYVDEEESEKGLVLDHCMIIERWAFAGAAREQLEEVAKDRPILYKLLGIKPKWGIDFSLDYVSQEICMEVMHVEQDFLTVEDALIAKQKLEHIIENTDWQAGAEELIARKAEWYDLSSDDHSDYKAQFFGWARAFDNRKVFS
Ga0209917_1075021	Ga0209917_10750212	F041612	VTLTRELLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG
Ga0209917_1083345	Ga0209917_10833452	F104555	MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIEHNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEV
Ga0209917_1091058	Ga0209917_10910582	F016383	MKNADFEYYYNNVPGKGKCRNNLIYTSLISKDRKIFCKWFYNDKVYHNNQNEVVDASLMDLKWHKEIE
Ga0209917_1095032	Ga0209917_10950322	F089940	MVSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE
Ga0209917_1095904	Ga0209917_10959042	F090210	LDHCMIIERYAFAGEARAQLEEVAQERPILYKLLGIKPKWGIDFSLDYVSQDICMEVMHVEQDFLSIEEAVEAKQKLEHIIETTDWEAGAQELIKRKSEWYNLSSDDHSDYKAQFFGWHRAFDNRKVFSG
Ga0209917_1096374	Ga0209917_10963741	F089905	MRTVREIQQEIREAEEAQAETEFSSVGWDFLNAEIIGLHAELKRATYHWDRLKLCGM
Ga0209917_1100506	Ga0209917_11005062	F089940	MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN

Scaffold ID

Protein ID

Family

Sequence

Ga0209917_1046441

Ga0209917_10464411

F043882

MGTFYIEYPELAYVHVPRTGMAMKKIIAEWLKPNFLVTDNENWQIDHPHICTVKSYYPSALTFSVVRNPWQRVFSLYKKIRTEGYWLDWNNVSLLDLKPINEWVLEYCDPDIVFEFPRWFTRFTNQLDFINIEGICVDIICKAENLDRDFLSVKEYLGCNAPLPDITNYDHWEYKKHLNQKSLN

Ga0209917_1058350

Ga0209917_10583501

F094957

MKALTQYMAQINAHLAIFGEAPLDPYRDYAEVRRAVEVLGSPEILAKDGELTREEVEARTNTWLDAITELDA

Ga0209917_1061750

Ga0209917_10617503

F090210

SPAKYWYVDEEESEKGLVLDHCMIIERWAFAGAAREQLEEVAKDRPILYKLLGIKPKWGIDFSLDYVSQEICMEVMHVEQDFLTVEDALIAKQKLEHIIENTDWQAGAEELIARKAEWYDLSSDDHSDYKAQFFGWARAFDNRKVFS

Ga0209917_1075021

Ga0209917_10750212

F041612

VTLTRELLAADAVTAATVRDGVELQVRAGLRVRDGDGVVARASATDTAPLAVTQQIDPAAHGGVGGTGGVTIETG

Ga0209917_1083345

Ga0209917_10833452

F104555

MRDDNPDNMTAFERLDWILGSPFGGEDLAALPVSDDQTIRQAIRRSIEHNGIQATGEHWAAVLDTIGPVPQLYLDTVKVIFNQEV

Ga0209917_1091058

Ga0209917_10910582

F016383

MKNADFEYYYNNVPGKGKCRNNLIYTSLISKDRKIFCKWFYNDKVYHNNQNEVVDASLMDLKWHKEIE

Ga0209917_1095032

Ga0209917_10950322

F089940

MVSTVKERRNYSMKYVSAALIVLGLSIVLGAETHDWFPMFAAQIALGTVTTISGGLFATLIDTSEE

Ga0209917_1095904

Ga0209917_10959042

F090210

LDHCMIIERYAFAGEARAQLEEVAQERPILYKLLGIKPKWGIDFSLDYVSQDICMEVMHVEQDFLSIEEAVEAKQKLEHIIETTDWEAGAQELIKRKSEWYNLSSDDHSDYKAQFFGWHRAFDNRKVFSG

Ga0209917_1096374

Ga0209917_10963741

F089905

MRTVREIQQEIREAEEAQAETEFSSVGWDFLNAEIIGLHAELKRATYHWDRLKLCGM

Ga0209917_1100506

Ga0209917_11005062

F089940

MVSTVKERRNYTMKYVSAALIVLGLSISIGAEAHDWFPMFVAQIALGMTVSFSGVLFATQIDFDDDDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026140: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences