NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026286

3300026286: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026286 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0055735 | Gp0103141 | Ga0209460
Sample NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size208284685
Sequencing Scaffolds7
Novel Protein Genes11
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007648Metagenome347Y
F054825Metagenome139Y
F100264Metagenome / Metatranscriptome102Y
F102689Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209460_1000285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi57518Open in IMG/M
Ga0209460_1000299All Organisms → cellular organisms → Bacteria54498Open in IMG/M
Ga0209460_1000373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae43542Open in IMG/M
Ga0209460_1000451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi37806Open in IMG/M
Ga0209460_1000510All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi34749Open in IMG/M
Ga0209460_1000604All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium30703Open in IMG/M
Ga0209460_1001087All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia18035Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209460_1000285Ga0209460_100028513F007648MAVEITPEQEIWVTTREGAAATGYNSQYLEKLANKNSRLPEAERLIKIRKRSGLFYELWLPDLLRYIDEIGYGPHQK
Ga0209460_1000285Ga0209460_100028522F007648MARETTPDQEIWVFTSEGAALTQYSREYLEKLAYKNWRLPENERVIQTRKRAGRYELWLPDLLRYKDEIGNGPLNIPKK
Ga0209460_1000285Ga0209460_100028523F007648MTAEAAQITGYNRQYIEKLSKKNWLLPEDERLFKLRRRSGHYYEIWLPDLLRYIDETGYGPHKNK
Ga0209460_1000285Ga0209460_100028524F007648MTKEAAEITGYNHEYMEILGKKNFRLPENERLIKIRKRSGRFYELWLPDLLRYIDEIGYGPHKNK
Ga0209460_1000285Ga0209460_100028534F007648MTTEGANITGYNSRYLQQLAKKNAQLPDNERFIKVRMRSNRHELWLPDLLHYIDEIGYGPHQNKK
Ga0209460_1000299Ga0209460_100029937F100264MSHGKTATGNNMLLSLASTLVVGYLTTRFRFFRFMWRFMPLLVVVSAWFMNRQAETVSEQESDERVKEPAA
Ga0209460_1000373Ga0209460_100037330F007648MAKAITPEQEIWVMTTEGAELTGYNRYYLEKLSKKLSQLPEDQRVIKWRKRLGRHELWLPDLLRYMDESGYGPHAKK
Ga0209460_1000451Ga0209460_100045130F007648MTTEGSEITGYNRQYLEKLAYKNWRLPENERVIKVRFRARRYEVWLPDLLRYIDEIGYGPHQNKQ
Ga0209460_1000510Ga0209460_10005104F007648MAVHITPEQEIWVMTPEGAELTGYSREYLERLAYKNLRLPDDERLIKTRKRVGRYEMWLPDLLRYIDEIGYGPHQNKK
Ga0209460_1000604Ga0209460_10006046F102689MGLLDGILKLVKKVVDSVLSEITKQINRVQNEVLQEMTKMVTVGFDDIWRGEDADQFKEKVLKMAVPQAESIVGICSSTFSGINQAMNIIQNADKKVNSIVSDLASEYAKI
Ga0209460_1001087Ga0209460_10010873F054825VSTHPATRNLDLWLIDKDDPGVTKPGPGVVYDRAGIGIVFMDERGRDFTFIDTGCALEAWAGQGARLSPALARDLAAALERFADYADGHTAYLLTEADDA
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