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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026366 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131983 | Gp0293669 | Ga0255362 |
| Sample Name | Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Restricted |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Dataset Contents | |
|---|---|
| Total Genome Size | 71950205 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peatland Microbial Communities From Stordalen Mire, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0466 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031306 | Metagenome | 183 | Y |
| F032702 | Metagenome | 179 | Y |
| F056181 | Metagenome | 138 | N |
| F082879 | Metagenome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0255362_1000017 | Not Available | 59270 | Open in IMG/M |
| Ga0255362_1008172 | Not Available | 839 | Open in IMG/M |
| Ga0255362_1011424 | Not Available | 703 | Open in IMG/M |
| Ga0255362_1022415 | Not Available | 515 | Open in IMG/M |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0255362_1000017 | Ga0255362_100001733 | F056181 | MEATDDLTSYRLRKRIHELEAENTRYQKNQNLARKWEFRITGVVLLAIGAVITLVAYPSYNGSPSASVLMMVGIGALFVGAVTVFLNTERFISQKVAEDLNLSSVIVVDDLLRDLRVKNRGVYLPSSMTGTNVKVFIPLRREYEVPAKVHLAEDRAFLIDLANPAQEGVLLKPLGYHLFAHTTRDLKVDWRDAPIETEGAEEPQQDREPQAGNTLTEKLQDVLVKGLELADKVDVSQNDGELSVRLHNTPYTGTCHSIGEEAPQVCEQIGCPLCSMIACIYTEYADTASVLEEARNEGSDIIIRCSELARPQRDRLGL |
| Ga0255362_1008172 | Ga0255362_10081721 | F032702 | LQLVAQKVDNVCEKTYMLAVRLVNFQKNKPIANVKVEIFRLENEPISLKQWAENLKNGSPFKRLILSTNTDNNGNVTAELSEGLYEVKVEKFGLNKSCKLTQNDEVLCIESKKHWWQ |
| Ga0255362_1011424 | Ga0255362_10114241 | F082879 | MSSEAEKTEFIQAMHALEEFVKILVNEYPLVFKDGSGIIKISPSIKKQFFPYEASLKIKKIQ |
| Ga0255362_1022415 | Ga0255362_10224151 | F031306 | MKDFECPICGGPTEKIWENSTRTRYGMRCKKGHTKTGGKSGDSMEYPTFLVSSEELVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |