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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026442 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296234 | Ga0256785 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0936-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 177660502 |
| Sequencing Scaffolds | 12 |
| Novel Protein Genes | 12 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Lotharella → Lotharella oceanica | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F028371 | Metagenome / Metatranscriptome | 191 | Y |
| F033655 | Metagenome / Metatranscriptome | 176 | Y |
| F034478 | Metagenome / Metatranscriptome | 174 | Y |
| F054479 | Metagenome / Metatranscriptome | 139 | Y |
| F054554 | Metagenome / Metatranscriptome | 139 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F080697 | Metagenome / Metatranscriptome | 114 | Y |
| F085035 | Metagenome / Metatranscriptome | 111 | N |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| F100108 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256785_1036834 | Not Available | 1046 | Open in IMG/M |
| Ga0256785_1048079 | Not Available | 882 | Open in IMG/M |
| Ga0256785_1048527 | Not Available | 876 | Open in IMG/M |
| Ga0256785_1048749 | All Organisms → cellular organisms → Eukaryota | 874 | Open in IMG/M |
| Ga0256785_1050450 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | 855 | Open in IMG/M |
| Ga0256785_1067446 | Not Available | 707 | Open in IMG/M |
| Ga0256785_1078277 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 639 | Open in IMG/M |
| Ga0256785_1087512 | All Organisms → cellular organisms → Eukaryota | 593 | Open in IMG/M |
| Ga0256785_1090540 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Lotharella → Lotharella oceanica | 580 | Open in IMG/M |
| Ga0256785_1091331 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Myxogastria → Myxogastromycetidae → Physariida → Physaraceae → Physarum → Physarum polycephalum | 576 | Open in IMG/M |
| Ga0256785_1102325 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 533 | Open in IMG/M |
| Ga0256785_1105487 | Not Available | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256785_1036834 | Ga0256785_10368341 | F034478 | RKHLRVLYSSKMEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL |
| Ga0256785_1048079 | Ga0256785_10480791 | F028371 | VVVNESFLVSASDDGLDVSRLLDFRSTFDDLLLGEFNTVMLKVPLSERSSIDLDDTALGQSVGSDEFVVGGVVDDTDDLGLSGDLFRSPGEVSGVESEGLEFVVSSSNSVSSDGLFTDLGESGRTTRFVLLLLLVDGHTTTGKSSLVSRVSGDTHCV |
| Ga0256785_1048527 | Ga0256785_10485271 | F071833 | MNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDVEACRKEENHRFATELKETFSQL |
| Ga0256785_1048749 | Ga0256785_10487492 | F080697 | VQLLLLAGLDLGLFLTSDLLSLGLKFLSGLSVVDLGFEDFHSSKSVFGFVLEEIIVVVIDQNETSSSATTEMSVEAESDDVLDISLELLGNEFGDSLVGDISLAGMEDFQDHLLSGEKSV |
| Ga0256785_1050450 | Ga0256785_10504501 | F054479 | MRHDMESCDQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ |
| Ga0256785_1067446 | Ga0256785_10674461 | F054554 | MLGKIKKGMGDVKASADIETEYLMAKNKNNFDHPAENGVRIKAYQDAFTAADDFLDRIKAWTDRYQDLINAEIKMLEKMNASASLASISSIFSTFSGAQNNVIQIRQQQLGKVIEYIQTPAKKFIGDQTPIRNKIDQTNKAWIELRYWKKKGGKHVEEEKNAQTAYDEHISALFRMFDTNIDAQVAQWVKYFADFEVEFFSNAANVAPRV |
| Ga0256785_1078277 | Ga0256785_10782771 | F033655 | VDSLFSVLSALLLSDTFNDDVGEVGHTDSLEHFLGVGSNSNSVDVDLGLFRDVVQSSFSFFFLDLEGDTSDGATSLDSLHQVSSETGDFISHSLGGEDTNIAQDLLVEVEISGELAVVLFDQDLGGSLDSLSSDSSHGLRVYFD |
| Ga0256785_1087512 | Ga0256785_10875121 | F005470 | VEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE |
| Ga0256785_1090540 | Ga0256785_10905401 | F100108 | SEMEALAEAEAMDMSSQVPIPAPIAIQAAPTTPDPSGLTPAGTTPAGNEDRSEVGMCEVCMYVMENKMQHQPYLCKGLKDPHYQNLCVQVMESLMWWVSNQVYWVNYGCQMNQNGAVSWVRPCPAHATCSWLQHLYLRKPFCAEDKNFPKPA |
| Ga0256785_1091331 | Ga0256785_10913311 | F085035 | NIDPQSQCNLESPTATPTQYYSLIDPGIPSSIYAYTYHQINRSDVRGKPTMAEAFGDIVKWVQKFSTANAGEEDLFVFVMPHFAKMEKITLAYELSRANLQAPPNWVFVNATNILEKNLPFLDKIQLDHIYSHLYGVAPQRLHRADADTKTVKECLAKVFPDAERFKDAIYLEMAQDVSKFL |
| Ga0256785_1102325 | Ga0256785_11023251 | F098404 | QIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYVEQWKTDKPHSTWFEIPRECHLGSQ |
| Ga0256785_1105487 | Ga0256785_11054871 | F071833 | IKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |