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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026632 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054847 | Ga0208573 |
| Sample Name | Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN346 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 2451489 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → grassland soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Chapel Hill, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 35.913 | Long. (o) | -79.056 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002217 | Metagenome / Metatranscriptome | 582 | Y |
| F045266 | Metagenome / Metatranscriptome | 153 | Y |
| F045919 | Metagenome | 152 | Y |
| F059390 | Metagenome / Metatranscriptome | 134 | Y |
| F090901 | Metagenome / Metatranscriptome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208573_10009 | All Organisms → Viruses → Predicted Viral | 1674 | Open in IMG/M |
| Ga0208573_10043 | Not Available | 1012 | Open in IMG/M |
| Ga0208573_10346 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 545 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208573_10009 | Ga0208573_100092 | F059390 | MQIATVGTLAITIGWLIALIVLLLAILGLIGVVPTSPVVVFGLIGALAVARLT |
| Ga0208573_10009 | Ga0208573_100094 | F045919 | MPGQLYDWTCSACSLEWTKRAVGLIAPPEDIYGSRETTVYEIGYPDNINATYGLMDGSGAQLARVLDGYGQDSLQGYGLSFDDVYDLAQDGTPMMMSGAAWYHWVAVRGVQGNTLWIANSAPGYKGVWDNLSREDFNRLGGFSVVWLT |
| Ga0208573_10043 | Ga0208573_100432 | F045266 | MPGGKKYTPPVSKAQARLFGAAAGGQIPGFSPDEAKNKLRGVDESKLPKTSKGKGKK |
| Ga0208573_10117 | Ga0208573_101172 | F090901 | VLLRRARVNEVGFEIVNTDLESRYRLRRILVEAMERAPEGKSKEWDGVRKS |
| Ga0208573_10346 | Ga0208573_103462 | F002217 | KDSRYKISGMHVPEITVRAGEQILLRVTARKAKSLNRDGSIHGFTLLRAKDRSKVEGWDLLFKPGTQEFLVTAPNEPGEYVAVCTVICSEEHEGMHMKVIVLP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |