 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026643 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054735 | Ga0207923 |
| Sample Name | Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN338 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 3260842 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → grassland soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Chapel Hill, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 35.913 | Long. (o) | -79.056 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025553 | Metagenome / Metatranscriptome | 201 | Y |
| F056939 | Metagenome | 137 | Y |
| F089142 | Metagenome / Metatranscriptome | 109 | Y |
| F103337 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207923_100015 | All Organisms → cellular organisms → Bacteria | 1698 | Open in IMG/M |
| Ga0207923_100076 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 939 | Open in IMG/M |
| Ga0207923_100224 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 644 | Open in IMG/M |
| Ga0207923_100322 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 573 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207923_100015 | Ga0207923_1000153 | F025553 | MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREGRGENFFLDILFYRM |
| Ga0207923_100076 | Ga0207923_1000763 | F089142 | MQFSTFVRKPFIVDAIEVTAANIGEVAKYVGDLREKEDGTPYILVDRRLVPNVDRVYPGFFMTKMGENVRCYSRKIFRDQFIIQTPEIKPWIDFMVQNELPNGQPIA |
| Ga0207923_100224 | Ga0207923_1002241 | F056939 | SVMYTLVLLLLTTAGAVAQNVLTQIPIPATSAGGQVAVNKVLNRVYVSADFSSGGTLTVIDGQTFAVLTTLSNSNGVSWDVKNDNFWTGNLAGGQVLTYSGSTNTQINANTVGFCPGETAFDCSKRRFWVGAQCGGGNDPVFVFNADTFALIAGPIATGGTLGPIVVNPLNGKLHVQSGGVSKEINPNTFAVTATGLGAVLAADQHKSKLFATS |
| Ga0207923_100322 | Ga0207923_1003221 | F103337 | MSGKVIVYKNRTNVITVSLGIDVSADTITSEIRSEPDVNSPLIATWVVSFKTDGKDGELILKLDDLYTSQIKANSGYMDLKRISGSEPLAVFDQPLEVAFRGAVT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |