Sample 3300026662

Overview

Basic Information
IMG/M Taxon OID	3300026662 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072132 \| Ga0207533
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-B (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6536758
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Desulfosporosinus metallidurans	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.42	Long. (^o)	-89.4	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001677	Metagenome / Metatranscriptome	654	Y
F003284	Metagenome	496	Y
F015608	Metagenome	253	Y
F015807	Metagenome / Metatranscriptome	252	Y
F054479	Metagenome / Metatranscriptome	139	Y

Family

Category

Number of Sequences

3D Structure?

F001677

Metagenome / Metatranscriptome

654

F003284

Metagenome

496

F015608

Metagenome

253

F015807

Metagenome / Metatranscriptome

252

F054479

Metagenome / Metatranscriptome

139

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207533_100004	Not Available	2827	Open in IMG/M
Ga0207533_100086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Desulfosporosinus metallidurans	882	Open in IMG/M
Ga0207533_100143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	773	Open in IMG/M
Ga0207533_100169	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
Ga0207533_100712	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	549	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207533_100004

Not Available

2827

Open in IMG/M

Ga0207533_100086

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfosporosinus → Desulfosporosinus metallidurans

882

Open in IMG/M

Ga0207533_100143

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium

773

Open in IMG/M

Ga0207533_100169

All Organisms → cellular organisms → Bacteria → Acidobacteria

747

Open in IMG/M

Ga0207533_100712

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium

549

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207533_100004	Ga0207533_1000045	F054479	MHMRHDMESCDQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ
Ga0207533_100086	Ga0207533_1000862	F015807	MPHRPEWMEGMERLVRHDGESRDTDRPTWSHHRRRSGGQGARREAGSERLEENHRVVINGSDPER
Ga0207533_100143	Ga0207533_1001432	F015608	IESKVEITNTLNVEKDQPQLSLVELQAAEGSFRQPTPAELSILTFWKLRYARSRAQELSNEFARLLNRGSPLE
Ga0207533_100169	Ga0207533_1001691	F003284	FWRKVTCEAFEPRTKLEEIEDARGLIIKGFTRITTVDVRGVRIDAIEMRDLRSANGIALSKGLVVSLREGGERPNEDRAFVDYDEIEYLLNAIDVISRVDETATKLPGFEARYRTRGDLELSVFRQTRSGTAVQMRTGICDYATVSMSLDDLAKIKAMIQEAKTRLDDIR
Ga0207533_100712	Ga0207533_1007121	F001677	TGPVSDAIFEGKDAATITAGLNPLAKSTLAKGEREVRIWYSSFGNPQYLVIIRQNGAATTGRMLLWWDQYYETTPTSADTRVDNFVRRNFDCGAISKRDSHFGEDRWISSVCEANLKGTPDWKAFLSEVEAHALPQTTATTDSVDQGEDQNWGITVERRSGVNYGVSYYHTALTFGAPEPGR

Scaffold ID

Protein ID

Family

Sequence

Ga0207533_100004

Ga0207533_1000045

F054479

MHMRHDMESCDQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ

Ga0207533_100086

Ga0207533_1000862

F015807

MPHRPEWMEGMERLVRHDGESRDTDRPTWSHHRRRSGGQGARREAGSERLEENHRVVINGSDPER

Ga0207533_100143

Ga0207533_1001432

F015608

IESKVEITNTLNVEKDQPQLSLVELQAAEGSFRQPTPAELSILTFWKLRYARSRAQELSNEFARLLNRGSPLE

Ga0207533_100169

Ga0207533_1001691

F003284

FWRKVTCEAFEPRTKLEEIEDARGLIIKGFTRITTVDVRGVRIDAIEMRDLRSANGIALSKGLVVSLREGGERPNEDRAFVDYDEIEYLLNAIDVISRVDETATKLPGFEARYRTRGDLELSVFRQTRSGTAVQMRTGICDYATVSMSLDDLAKIKAMIQEAKTRLDDIR

Ga0207533_100712

Ga0207533_1007121

F001677

TGPVSDAIFEGKDAATITAGLNPLAKSTLAKGEREVRIWYSSFGNPQYLVIIRQNGAATTGRMLLWWDQYYETTPTSADTRVDNFVRRNFDCGAISKRDSHFGEDRWISSVCEANLKGTPDWKAFLSEVEAHALPQTTATTDSVDQGEDQNWGITVERRSGVNYGVSYYHTALTFGAPEPGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026662: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-B (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences