Basic Information | |
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IMG/M Taxon OID | 3300026663 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072129 | Ga0207532 |
Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-B (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 7042990 |
Sequencing Scaffolds | 6 |
Novel Protein Genes | 7 |
Associated Families | 7 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.43 | Long. (o) | -89.41 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003564 | Metagenome / Metatranscriptome | 479 | Y |
F003779 | Metagenome / Metatranscriptome | 469 | Y |
F030422 | Metagenome / Metatranscriptome | 185 | Y |
F053646 | Metagenome / Metatranscriptome | 141 | Y |
F057613 | Metagenome | 136 | Y |
F059931 | Metagenome / Metatranscriptome | 133 | Y |
F095664 | Metagenome / Metatranscriptome | 105 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0207532_100194 | Not Available | 794 | Open in IMG/M |
Ga0207532_100340 | Not Available | 688 | Open in IMG/M |
Ga0207532_100469 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 642 | Open in IMG/M |
Ga0207532_100742 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 577 | Open in IMG/M |
Ga0207532_100905 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 552 | Open in IMG/M |
Ga0207532_101270 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 503 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0207532_100058 | Ga0207532_1000581 | F095664 | MPFDRRHVLAQWGGTLPGGEIWSNSLRLASTDTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGPDILPGMRVCVMSQRGTGATNVVTGVDVGRVL |
Ga0207532_100194 | Ga0207532_1001942 | F059931 | MGDLLVYLRDGIAAWLPLFFAVLLVLMVYILWRTLQ |
Ga0207532_100340 | Ga0207532_1003403 | F003564 | REDGEELHAEVRCWDKAHAAAERGANADALAAIADRGSAIALEYAEQVESPAKRGAVLISIWFDAADNGNLRRRVSYERAPA |
Ga0207532_100469 | Ga0207532_1004692 | F030422 | VTVSVLSDKSAASYVLSLLPTFGAASALTPEEERRLGAVVESLVRFTLDNAYPNDELGEIEVTLEADEGFVRVVVHDWGLPLTSAGADFGPLPEPLAALASEARSLQLVNL |
Ga0207532_100742 | Ga0207532_1007421 | F057613 | MLVPSHDSKATALGIGDSSQVGFLWPGAQRKTDNQSKATYVNHLIGMALGAVDIANGEVYFRSNHGFKSLPSVVSAASGGGRTLNLRSAGLYTYLFATYDGYGSEVWY |
Ga0207532_100905 | Ga0207532_1009051 | F053646 | MTKRLILPALLLAALALAATAAAGSGQGKGKGKGHGQHGKFGPYDVVTDDHGSCSNAWAVDTEKRTFKVRRNNDGSY |
Ga0207532_101270 | Ga0207532_1012701 | F003779 | MKMTLKNRTALVALLFGLALSLVPKVNASGPFATNYTNASLTGVYGYSSDGWHLGSSNPSKNTTNIPLDAAGVMWFDGLSTFKFHDTADLGGFVIQRGTADNPIVGTYTVNPDGTGTMQWFSDGSNHARAFAIVDGGRELQFGAADGLDVARG |
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