Sample 3300026718

Overview

Basic Information
IMG/M Taxon OID	3300026718 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072094 \| Ga0207501
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	17371584
Sequencing Scaffolds	12
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F001436	Metagenome / Metatranscriptome	695	Y
F005549	Metagenome / Metatranscriptome	397	Y
F025757	Metagenome	200	N
F032880	Metagenome	179	Y
F033787	Metagenome / Metatranscriptome	176	N
F034688	Metagenome / Metatranscriptome	174	Y
F035872	Metagenome / Metatranscriptome	171	Y
F040842	Metagenome / Metatranscriptome	161	N
F054151	Metagenome / Metatranscriptome	140	N
F077375	Metagenome / Metatranscriptome	117	Y
F079360	Metagenome / Metatranscriptome	116	N
F085355	Metagenome / Metatranscriptome	111	Y

Family

Category

Number of Sequences

3D Structure?

F001033

Metagenome / Metatranscriptome

799

F001436

Metagenome / Metatranscriptome

695

F005549

Metagenome / Metatranscriptome

397

F025757

Metagenome

200

F032880

Metagenome

179

F033787

Metagenome / Metatranscriptome

176

F034688

Metagenome / Metatranscriptome

174

F035872

Metagenome / Metatranscriptome

171

F040842

Metagenome / Metatranscriptome

161

F054151

Metagenome / Metatranscriptome

140

F077375

Metagenome / Metatranscriptome

117

F079360

Metagenome / Metatranscriptome

116

F085355

Metagenome / Metatranscriptome

111

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207501_100328	Not Available	926	Open in IMG/M
Ga0207501_100545	Not Available	816	Open in IMG/M
Ga0207501_101071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	690	Open in IMG/M
Ga0207501_101405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	640	Open in IMG/M
Ga0207501_101490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	629	Open in IMG/M
Ga0207501_101716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	604	Open in IMG/M
Ga0207501_101946	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
Ga0207501_102208	Not Available	562	Open in IMG/M
Ga0207501_102619	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
Ga0207501_102854	Not Available	522	Open in IMG/M
Ga0207501_102892	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
Ga0207501_103173	Not Available	505	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207501_100328

Not Available

926

Open in IMG/M

Ga0207501_100545

Not Available

816

Open in IMG/M

Ga0207501_101071

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

690

Open in IMG/M

Ga0207501_101405

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

640

Open in IMG/M

Ga0207501_101490

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

629

Open in IMG/M

Ga0207501_101716

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

604

Open in IMG/M

Ga0207501_101946

All Organisms → cellular organisms → Bacteria

582

Open in IMG/M

Ga0207501_102208

Not Available

562

Open in IMG/M

Ga0207501_102619

All Organisms → cellular organisms → Bacteria

534

Open in IMG/M

Ga0207501_102854

Not Available

522

Open in IMG/M

Ga0207501_102892

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

520

Open in IMG/M

Ga0207501_103173

Not Available

505

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207501_100328	Ga0207501_1003281	F001436	MKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRTGVGTREFPPGVIKLWKQRLGRAN
Ga0207501_100545	Ga0207501_1005452	F005549	LPRGRGAAEWSVMLKFLRKLTAIPAVKYSIIAVTSFLWLVGFADQLPDIEQAAKYVGISLLMLAVAAMA
Ga0207501_101071	Ga0207501_1010711	F054151	LLTSAPRKRDTRLAECKFPSVNSPDMRKVDQYTLADHFRALAEGLSLRAVSERAPAQRAELQRLAECYAELAKQQSPADHFARGVGPR
Ga0207501_101405	Ga0207501_1014052	F085355	MDSLRAALTWIKDLLNWLPEPVVALLILGIAVLLA
Ga0207501_101490	Ga0207501_1014901	F079360	MRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLP
Ga0207501_101716	Ga0207501_1017161	F033787	FGPNYLKEAAMRLNLKLSMLGCALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSGLE
Ga0207501_101929	Ga0207501_1019292	F035872	MPRRKSLTRRFLQHLPGRRYDDWDEGKLVEPALERSHKSRFAQTVTFGAVFFAGLALSA
Ga0207501_101946	Ga0207501_1019461	F034688	TVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK
Ga0207501_102208	Ga0207501_1022081	F025757	SFCAQLIENHRLCGFSRPHRTEGHPPFKAIESTVRVGLALSATRAPMSYSASLSLFWLEMAVLIGCVALSIGMRSGPAMWVALGIVAHCAMWLAMHDEEILIRLVASTLVYLGLLKFSPNAARVWLCAGGALAGAFLLGTTALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQL
Ga0207501_102619	Ga0207501_1026191	F077375	VGKIARGAYVLVVGTMVVAWVISVNKEAPAKPQQTGPQVSYMYS
Ga0207501_102854	Ga0207501_1028541	F032880	MHPLRMTLFSTGLTFAMFLAHAASAQITTQMKATAMEKMMPADRVSRMRECEKQMRQQKIKLEDRSRFVD
Ga0207501_102892	Ga0207501_1028921	F001033	ASTNEKRELLMCGHSLIARLTIAVFVFLMLGLTSVVHAERPDSTAGTSRAGTRKLFIDPSSTSGALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLRLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFP
Ga0207501_103173	Ga0207501_1031732	F040842	VTLDEGNGTGRPEDEAGVGFRDRMTMFQSSFSRFVAIGGILGIGTGLAAILGSQDVEAWIIGIVVSGLSVILTAIVWS

Scaffold ID

Protein ID

Family

Sequence

Ga0207501_100328

Ga0207501_1003281

F001436

MKRDKDIVALIELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRTGVGTREFPPGVIKLWKQRLGRAN

Ga0207501_100545

Ga0207501_1005452

F005549

LPRGRGAAEWSVMLKFLRKLTAIPAVKYSIIAVTSFLWLVGFADQLPDIEQAAKYVGISLLMLAVAAMA

Ga0207501_101071

Ga0207501_1010711

F054151

LLTSAPRKRDTRLAECKFPSVNSPDMRKVDQYTLADHFRALAEGLSLRAVSERAPAQRAELQRLAECYAELAKQQSPADHFARGVGPR

Ga0207501_101405

Ga0207501_1014052

F085355

MDSLRAALTWIKDLLNWLPEPVVALLILGIAVLLA

Ga0207501_101490

Ga0207501_1014901

F079360

MRRTLTVAAIAVLVFAGIAKLVAAPSRTAAGTDTSIQPTISTYDLHTGYPGMNTLP

Ga0207501_101716

Ga0207501_1017161

F033787

FGPNYLKEAAMRLNLKLSMLGCALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSGLE

Ga0207501_101929

Ga0207501_1019292

F035872

MPRRKSLTRRFLQHLPGRRYDDWDEGKLVEPALERSHKSRFAQTVTFGAVFFAGLALSA

Ga0207501_101946

Ga0207501_1019461

F034688

TVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK

Ga0207501_102208

Ga0207501_1022081

F025757

SFCAQLIENHRLCGFSRPHRTEGHPPFKAIESTVRVGLALSATRAPMSYSASLSLFWLEMAVLIGCVALSIGMRSGPAMWVALGIVAHCAMWLAMHDEEILIRLVASTLVYLGLLKFSPNAARVWLCAGGALAGAFLLGTTALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQL

Ga0207501_102619

Ga0207501_1026191

F077375

VGKIARGAYVLVVGTMVVAWVISVNKEAPAKPQQTGPQVSYMYS

Ga0207501_102854

Ga0207501_1028541

F032880

MHPLRMTLFSTGLTFAMFLAHAASAQITTQMKATAMEKMMPADRVSRMRECEKQMRQQKIKLEDRSRFVD

Ga0207501_102892

Ga0207501_1028921

F001033

ASTNEKRELLMCGHSLIARLTIAVFVFLMLGLTSVVHAERPDSTAGTSRAGTRKLFIDPSSTSGALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLRLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFP

Ga0207501_103173

Ga0207501_1031732

F040842

VTLDEGNGTGRPEDEAGVGFRDRMTMFQSSFSRFVAIGGILGIGTGLAAILGSQDVEAWIIGIVVSGLSVILTAIVWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026718: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences