NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026826

3300026826: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026826 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0055860 | Ga0207517
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33798355
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000569Metagenome / Metatranscriptome1018Y
F014308Metagenome / Metatranscriptome264Y
F019867Metagenome227Y
F025757Metagenome200N
F028161Metagenome / Metatranscriptome192N
F058486Metagenome / Metatranscriptome135Y
F070538Metagenome123N
F082749Metagenome / Metatranscriptome113Y
F085779Metagenome / Metatranscriptome111N
F097305Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207517_1000072Not Available1263Open in IMG/M
Ga0207517_1000116Not Available1151Open in IMG/M
Ga0207517_1000178All Organisms → cellular organisms → Bacteria → Acidobacteria1070Open in IMG/M
Ga0207517_1000635All Organisms → cellular organisms → Bacteria806Open in IMG/M
Ga0207517_1000778All Organisms → cellular organisms → Bacteria767Open in IMG/M
Ga0207517_1002459All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium602Open in IMG/M
Ga0207517_1002738Not Available588Open in IMG/M
Ga0207517_1003171Not Available568Open in IMG/M
Ga0207517_1004275Not Available530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207517_1000072Ga0207517_10000722F014308MSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMG
Ga0207517_1000116Ga0207517_10001162F070538GSDVQYTNPFTGGVLLFTSGGFPPDRSIHYADAHADAGLALAIGGGFDIRLSKRIGLRTAMDYDPTFLVRPVFPDLTPDAQGQVHLQPAPNERQRQDHVRLSIGMVWHIR
Ga0207517_1000178Ga0207517_10001782F019867MHRHVTGFSAATILVVATASPLHAQGIEVFGGYSVTADYVQNRPAILVVDQKVSPFFSLGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDGSTAGIACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQTLVGIVYTRSTFMMNGS
Ga0207517_1000635Ga0207517_10006352F028161LLAAQVIQAAQAQDNKNIREDDYVRKVPLEDFKVPIVPIIPPGSSLDLRPGRTPDSADRVYNSTPFARDPTTPSIGLSIKSPFDDRK
Ga0207517_1000778Ga0207517_10007781F000569DSEAGQPYRAQFWRPVVPKSVSQKRPSMDLHIKKVWLPGAASCLLFFGFYYVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGKPYTLSHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLGEQLP
Ga0207517_1002459Ga0207517_10024591F058486AMVIKGPGGTKIEKVGAKLTLKTKGVYHLTMVKQAPDDNHLVLKIT
Ga0207517_1002738Ga0207517_10027381F097305MENEKSGKDKKSDSRSQRLAAELRENLRRRKAQVRGRKAPEAGEGTKRPGLPPRGG
Ga0207517_1003086Ga0207517_10030862F082749FAANATGEGRLAPAFARRGGMDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS
Ga0207517_1003171Ga0207517_10031711F025757RPSPCPYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQL
Ga0207517_1004275Ga0207517_10042751F085779PRRPINPGLVPNTGQINTGAAPQPWSKSAEVDNIPAPAEAWAALVQPISRQPSAGGGATTTGTGGQQPPASGTINASSEPPPSGPIGSFGQTIPAKFSKRNDILDHLPTMAIPLPLTQEQRKQIYDAVMAEKSQPVVGADALELASELSPNQALNGMRPLPESVRSIDGVSRLYYI
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