NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026828

3300026828: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026828 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0072099 | Ga0207502
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33819262
Sequencing Scaffolds39
Novel Protein Genes41
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14622
Not Available19
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F002103Metagenome / Metatranscriptome593Y
F007000Metagenome / Metatranscriptome360Y
F011852Metagenome / Metatranscriptome286Y
F011965Metagenome285Y
F014308Metagenome / Metatranscriptome264Y
F015492Metagenome / Metatranscriptome254Y
F016054Metagenome250Y
F017514Metagenome / Metatranscriptome240Y
F017538Metagenome / Metatranscriptome240Y
F023931Metagenome208Y
F024822Metagenome / Metatranscriptome204N
F025096Metagenome / Metatranscriptome203Y
F026499Metagenome197N
F032172Metagenome / Metatranscriptome180Y
F032607Metagenome / Metatranscriptome179Y
F037759Metagenome / Metatranscriptome167N
F038328Metagenome / Metatranscriptome166Y
F038480Metagenome166Y
F040813Metagenome / Metatranscriptome161Y
F041300Metagenome / Metatranscriptome160Y
F043066Metagenome / Metatranscriptome157Y
F045732Metagenome / Metatranscriptome152N
F045848Metagenome / Metatranscriptome152Y
F050726Metagenome145Y
F053646Metagenome / Metatranscriptome141Y
F063452Metagenome129Y
F064047Metagenome / Metatranscriptome129Y
F068281Metagenome125Y
F071766Metagenome122Y
F072495Metagenome121N
F077375Metagenome / Metatranscriptome117Y
F081321Metagenome / Metatranscriptome114N
F082749Metagenome / Metatranscriptome113Y
F083408Metagenome / Metatranscriptome113Y
F084203Metagenome / Metatranscriptome112N
F089000Metagenome109N
F089166Metagenome / Metatranscriptome109Y
F099265Metagenome / Metatranscriptome103N
F100610Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207502_100210All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1794Open in IMG/M
Ga0207502_100213All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621790Open in IMG/M
Ga0207502_100384Not Available1539Open in IMG/M
Ga0207502_100400All Organisms → cellular organisms → Bacteria1524Open in IMG/M
Ga0207502_100582All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621371Open in IMG/M
Ga0207502_100997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1155Open in IMG/M
Ga0207502_101046Not Available1142Open in IMG/M
Ga0207502_101216All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1084Open in IMG/M
Ga0207502_101307All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1058Open in IMG/M
Ga0207502_101360All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes1044Open in IMG/M
Ga0207502_101378All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1039Open in IMG/M
Ga0207502_102040Not Available901Open in IMG/M
Ga0207502_102461Not Available844Open in IMG/M
Ga0207502_102710Not Available817Open in IMG/M
Ga0207502_102724Not Available816Open in IMG/M
Ga0207502_102783Not Available810Open in IMG/M
Ga0207502_102925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales795Open in IMG/M
Ga0207502_102941Not Available794Open in IMG/M
Ga0207502_103225All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes769Open in IMG/M
Ga0207502_103521All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium745Open in IMG/M
Ga0207502_103954Not Available714Open in IMG/M
Ga0207502_104048Not Available709Open in IMG/M
Ga0207502_104228Not Available698Open in IMG/M
Ga0207502_104701Not Available671Open in IMG/M
Ga0207502_104897All Organisms → cellular organisms → Bacteria661Open in IMG/M
Ga0207502_105044Not Available653Open in IMG/M
Ga0207502_105513Not Available631Open in IMG/M
Ga0207502_106333All Organisms → cellular organisms → Bacteria602Open in IMG/M
Ga0207502_106606Not Available593Open in IMG/M
Ga0207502_106731Not Available589Open in IMG/M
Ga0207502_106945All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium582Open in IMG/M
Ga0207502_107136Not Available577Open in IMG/M
Ga0207502_107712Not Available560Open in IMG/M
Ga0207502_108048All Organisms → cellular organisms → Bacteria552Open in IMG/M
Ga0207502_108084All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes551Open in IMG/M
Ga0207502_108096Not Available551Open in IMG/M
Ga0207502_108485All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria541Open in IMG/M
Ga0207502_108862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium531Open in IMG/M
Ga0207502_109624All Organisms → cellular organisms → Archaea515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207502_100102Ga0207502_1001023F082749RGGMDGESVDAAGKLGRKRLINHAMTLDAGLSFERLRHDIHPEVSLPARPVPGMTLVLVRFINHFEALRHESLGQLLCDEIGGSHIARLGERGLPVNGHKQVLKASPATAHNVRS
Ga0207502_100210Ga0207502_1002102F015492MKRQVSIYVAALLALLYAGLQSGARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIHWKSKDGSQTTIMRGQGLRAFQTIGEFRIEAAGDDSRSFRYGYVLFRLKSEKSAQEDKI
Ga0207502_100213Ga0207502_1002133F064047MTLMKSSRAGLFALAFGILLSLFLSVPSYDVSYAQTQA
Ga0207502_100384Ga0207502_1003841F045732LRLRGPNVVSKMRHRRRRVFIDTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA
Ga0207502_100400Ga0207502_1004003F011852MHVSGVCVQMRMPLFSYFVVMGSTLTLGLIYISNRIEPLGSPVPTSQIVGLARPYMPEPEQSPYAVTGTNFAAANKPAAARAAAETTARRADSLQQQPAANTEVRRVPRWKHIAQNPIAALMGVH
Ga0207502_100582Ga0207502_1005823F083408KRGADVLVRVEKMMDDANRALGPVAPARPTVSSGKDKQAQVPDKGEALAASLEGRAFGSH
Ga0207502_100997Ga0207502_1009971F084203MRARIRRALWMFGALAFVAMPASAQESTEVAPLTTEDSALLANALVFDPGALATAPKKPLRLPGYRNNAYDITRTQKVDGSTTVVVKQPVQTEWSNSVGADLAPSKPTAYPLPLSTERNNGMPAGAAW
Ga0207502_101046Ga0207502_1010463F068281RSIGRTHRLARCKIAGQHFEKPAEVRLVPIADISYAQKKVRFVAFLVGTSAAPSELIIMTYQSDARRDKRDDKFYISWIIRGGIVLVIVIAALAFTSTGNYPDLDVPQMTRTVPGPAS
Ga0207502_101216Ga0207502_1012161F011965LAYHVLVVGADAWICAAAGSAGQNTYTQIYCLNPHDPSQHKFIDILKKTINGIAQHDPHWPTSAAGQTIGIHAMYGSAAGAWLDVGFVHHSWGANGEAVLNLSTNTWSLKTNADMYSSGHSSIGGKFVNGSGSINGMDSRGALLRDPNNLMDATKYSFIMQPPSTAGWYDAEHSSWFNSSTNPQAPVLFSRYNCTAPPGPLTWYGEIIAAATDGSNTVWRFAHNHNGGLVGFAGQSFAQISNDGRWALFSSYWDGTLGAAAGDFGFSKRIDTFIVDLVTSASPPTPSPGPTCLRYNPNGRCLKWSN
Ga0207502_101307Ga0207502_1013071F099265MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGELSPVEASKYLVNRKQDECRVSYDHNNVEYILRVMA
Ga0207502_101360Ga0207502_1013603F038480ILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACVVSGTYCVDLCH
Ga0207502_101378Ga0207502_1013783F100610MMPVIISLFGNEDMEISEFPLTNKSVFYRCSYGECFRFIADKCMHCCANPIPDTEMHINYLRRLPDIKKAVTDLG
Ga0207502_102040Ga0207502_1020402F072495MLANEVEWLKPPQYVAFRTMERWVVIPVIARIESREGGRLYGYWFSRFTPEGAFREVPVDYVVDLGSDDDAQKLVDLIRGGRELPAEFVQRLHVIAD
Ga0207502_102461Ga0207502_1024611F017538MARTPMPASLTLVRASRNRDGEWSSDDYDVFEGKQLVGRITLTPQAPEGRPWFWTITARPESSQNQGYAVSREQAMLE
Ga0207502_102710Ga0207502_1027101F077375MVGKIARGAYVLVVGTMVVAWVISVNKEAPAKPQQTGPQ
Ga0207502_102724Ga0207502_1027241F037759MKGTGLLHPGKLAAVIVAGGLLSGAARAQSPELGAPSIGILPPSDILASVSYLGLDPSGEPVRRGAYYMLHAFDRAGIELLVVVDAQFGDVLFMAPALNTSLTPPYVRAARIIQVEPPESGGQQKK
Ga0207502_102783Ga0207502_1027833F089000MGEPTPATPASKYFAATVAMIAGAFFFAVGAGLLPIPGGPSNLHGPLWLLLCVGLAFFLAGLAILIPMLGHANDSGDLPAGAPFWLRAMQYLIGLCIFACFG
Ga0207502_102925Ga0207502_1029253F089166MCIACELGYWAMVDALEAERNAAKKNNAGDHPAFSCEPEAEPSPAPR
Ga0207502_102941Ga0207502_1029411F025096MGNTNFMVLNKRGTWRLCWLFVAVCALSACSHQSLQEPVPSFSSVFPYESRDVGNYSVDDHTKAPLQWVVQAWVKTETTTLYAKSINLEGIVQHVTWNNEGAPSVGVQHIPGDVRTIPFAWMNAKEILLITEPVRVHFYTLLKEESSAPTPMDH
Ga0207502_103225Ga0207502_1032251F007000MMRGPHHTLLVSILIAAPVVAQNPGSVPRAILLPDTLGANFAAADTLTGTSGPADYDFLVGTWRFTFQARRRDGSFTPAFTGHWVFTKKQTGGQGVLLEDHWRPDDATSRWEAGTWTYRAYNPERKIWEMQGINTNVGAWQPGLMWTAGESRLLTEWYGPMLVRFRYFAIQPDKFLWRADATFDRGKSWIADYWTMEVHRISR
Ga0207502_103521Ga0207502_1035212F040813LAGKLSVWKQKIVVFAGTLGAPGLFLISFLDSSVLTFPVINDLLLIELS
Ga0207502_103954Ga0207502_1039542F050726ETDRWTLAEELWSFGEDSLYPVALQLSDEDMVRLWLLAGGLLLKERARSSGEATALAAVAVIEGNQRPLARKRRRPQPNRLRFEQTPEERYAEISRIEDSPSFDEKWR
Ga0207502_104048Ga0207502_1040481F041300LPFFSAVDYRRYAAECVRLAQQVADPDDKVRLLDMAETFRELADKNDA
Ga0207502_104149Ga0207502_1041492F023931MNEAQTLSYTRAQTATRLRIYQVLFAISIIAGLLAGLWCIFDPVGFAQLVFQIDPYPQTWPRIWGATLFGLQLAYIPGVRNPSFYRWPNWASIAIKFLMTIIFLTAGSSFYLLAAWELVWFVILLVAYYRLM
Ga0207502_104228Ga0207502_1042282F024822LGEQLRLQFYSLRKGTADEPEQATYKWDRGAYQRTGGGMTDISSFSVHPLARDIFVVQSAAAKRPGMFEYAVARRLVDGVYQVIAIDEADAGRVTRARFCKRASDSSCRIQTRNQLYAFARATAERRRGQGGLVLRLADGVAESSR
Ga0207502_104701Ga0207502_1047011F043066MAAAEQHRYEPGHSITRFCCGESMKLVKAIPRIGSYPELQTYRCERCHNVETIEVKITGS
Ga0207502_104897Ga0207502_1048971F032607ALLLRFFGFIPWAAISFLAGALVSRIGWIAVGKVSGADPEAVLASQR
Ga0207502_105044Ga0207502_1050441F026499ILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSVFSQQKSILEDKLQEKEALAATQGTKIKQLEGVRDELDKRVRVIEALLASEREVAERKTRRPTEILGAAG
Ga0207502_105513Ga0207502_1055132F053646MTKRLILPALLLAALALAATAAAGSGQGKGKGKGHGHHGKFGPYDVVTDDHGSCSNAWAVDTEKRTFKVRRNN
Ga0207502_106333Ga0207502_1063332F000268MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPRGFTTMIKPQKLIAGRVYRGSATDEHGGSSGVTFGFD
Ga0207502_106606Ga0207502_1066061F081321GNARFATLSQLMRIVSRAAALVSLALMLASPARAACTGSCEPSVEVAQAAMQKIFKETFLSPYTLISFERLDGRSGERYGGAFYEMRIRAVLHYDGVRLRCRRPSCPELHHYLLENDAASKKATVAGWLFLANDGDGWKTVPLTLQSPQ
Ga0207502_106731Ga0207502_1067312F032172MFVSHMDGVGRAMTMMKLEAEAPVQIIRGRFGPSGGIIPELDKDRQVIPTGYFNNRLGFHALMRAVGVDERVVTLNELFANPKLNLEITRRIEAGQKSVSISGEDAAKTGEF
Ga0207502_106945Ga0207502_1069451F002103MSTDEPFRTDYEFLKGVDYIFVSLDRNLSGEECHELAKKYFETHKGMTLPGQALRVDLRPAFGKPLADVTPKFRAVSIGYTFTPQR
Ga0207502_107136Ga0207502_1071361F017514MPQGKERTKEQLLKEAKRLGIKGRSRMNKGALKAAVDR
Ga0207502_107712Ga0207502_1077122F045732KLRGPRAESLVSKMRHRRRKVFIDTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWVATVIDWTRRAA
Ga0207502_108048Ga0207502_1080482F014308MFMAGSTIGIQLIMPKTGTSPKATPEQQASERDAAAQPVVKAPPPPGMGKIVDKIA
Ga0207502_108084Ga0207502_1080841F063452LSKAGTMNVDPIPKNLIAVHDLLTEALAISEDSGGACRYGIALFPRAGRFEAPVFGVVTRGGESTTLTYRLLRSLMERTVLVSGRVTATLSDGMSYSSTRTAPPALLDQPVLHLSIRCVIGTTPENHDRTAPLDSSLFAGDLKAPLVLLMESRPEGWPR
Ga0207502_108096Ga0207502_1080961F071766MDEDFITLEVEEEGRGRLQFELPLDITDEEIAYITRAESGLLELLDPDTGEVVFSCTPVLVH
Ga0207502_108485Ga0207502_1084852F045848LANVILAGYRSTWLLPEKSREPWLAAEEETARQGLGASTQVQERSVLRATIAQVRERFAAWKLELPRIDHPEIGTI
Ga0207502_108862Ga0207502_1088621F038328YQTQVPVVRWDPVPGAASYEVQVADWNGTACLWGTADYLKNTAVPEWAPLASTSADPAPWQGTLAEDVLPIITPGDYCFRVRARADRAPGNQEVWGDYTYLQNGNVDSKDPVGPAFTWTAYPSAADPTAAGACLFGYPCGSSYLGPATGATSTRTPLFTWDAISGANSYFVVVSKD
Ga0207502_109624Ga0207502_1096241F016054FVGHSAWMVESLLENEKEPDVYELGVAEGIKEMLALRGFTKEKILNSTVSNLAETLQIDYYVALIIYNSAKKN

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