Sample 3300026844

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300026844

3300026844: Soil and rhizosphere microbial communities from Laval, Canada - mgLAA (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300026844 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099864 \| Gp0111017 \| Ga0208760
Sample Name	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	28024915
Sequencing Scaffolds	9
Novel Protein Genes	11
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Laval, Canada
Coordinates	Lat. (^o)	45.54	Long. (^o)	-73.72	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001436	Metagenome / Metatranscriptome	695	Y
F007147	Metagenome / Metatranscriptome	357	Y
F012999	Metagenome / Metatranscriptome	275	Y
F021174	Metagenome / Metatranscriptome	220	Y
F023906	Metagenome / Metatranscriptome	208	N
F030107	Metagenome / Metatranscriptome	186	Y
F031088	Metagenome / Metatranscriptome	183	Y
F050534	Metagenome / Metatranscriptome	145	Y
F070443	Metagenome / Metatranscriptome	123	N
F088455	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208760_100719	Not Available	759	Open in IMG/M
Ga0208760_100799	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
Ga0208760_102183	Not Available	564	Open in IMG/M
Ga0208760_102223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	562	Open in IMG/M
Ga0208760_102492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
Ga0208760_102501	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545	Open in IMG/M
Ga0208760_102552	Not Available	543	Open in IMG/M
Ga0208760_102561	Not Available	542	Open in IMG/M
Ga0208760_103464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208760_100597	Ga0208760_1005972	F050534	MEEVTDEPLYRDRVCGIDIGKAGMAATIRVPSDANP
Ga0208760_100719	Ga0208760_1007191	F001436	MDTQKQDVATLIELLKMAAERWPRSEADQVSQSELLREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRLGGAN
Ga0208760_100799	Ga0208760_1007991	F001436	MCLFVMPDTATSVLLCVSSIAKGVVMDTHKQDVATLIELLKMAAERWPRSEADQVSQSDLLREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRLGRAN
Ga0208760_102183	Ga0208760_1021832	F088455	AMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRLHRR
Ga0208760_102223	Ga0208760_1022231	F070443	MIGLEGATCNTALIPEMEEIGANILLAEHIGRALVVGSEPADRLDVDVPGPLGKAGKPHVVDHTLTQRGHGRSPFGFKRQDLCPGTDQIPQHAVLNDYAFYG
Ga0208760_102492	Ga0208760_1024921	F007147	DRVRRCLAGGVVVFLWIVPLQIRLLAEDDPLQKAVNYLFTGRNDPQDAPEILDRKSCVVVVSNLKFKQPIRYYLGRFRMDTAFINKTYAGSETVYSLDVKGGEVIVEYLDPGKSTVLHGNKSAQISLPGDIDQISKALALIASLCRNGKPAE
Ga0208760_102501	Ga0208760_1025011	F021174	HAPRPVTPLSFDLVVRTLSQGFTAAQAEYDCPMMASSREINHYFYMAFHPIPDEAELQDRMTRYHDRLATKVPGVGKRWEEEWKPEVRALNEAERTADYEGLSDSELVTKLDELTDRMRHQWWIHGHINFVLLSSSAFCDLYDEVMQPAESTESYQTLQGFHTRSVDVSRGLWELSRKVK
Ga0208760_102552	Ga0208760_1025522	F012999	MRMDYDLAESLMGAGFPQIGKGSLIGPMNKLVWRSDDRVYVPTLEELIEACGMNFGSLDKQHGGWLASANYGQSCFAE
Ga0208760_102561	Ga0208760_1025611	F023906	MKCLACSAEMLLTEVCPDRTTVCGIERHTFRCSACAHTAKRLILNRSRVPITNLPVVIPPKAPVIDPHNGRPTAQSAWAKSIEKVNNKQAELKQRAAATTEWGSVVEKLSVRLKQQAVAARAEALARTVEKLRSL
Ga0208760_103240	Ga0208760_1032401	F030107	IQRAHEPQGMITQMALAEARTPQVPEPEAVPTTIYRVEVTLASGATLLVAEATDFEYAMEVGMRVIDEAEAGGTVAIGDATIDGRQVVSVDVLGRNGA
Ga0208760_103464	Ga0208760_1034642	F031088	MKLNVLAVALAASAIGAFSANAQVVIEERRDPPVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGVGDCSSKTVHKEDITG

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