Sample 3300027092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300027092

3300027092: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300027092 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0057304 \| Ga0207945
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9156595
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012706	Metagenome / Metatranscriptome	278	Y
F016708	Metagenome / Metatranscriptome	245	N
F062944	Metagenome / Metatranscriptome	130	Y
F063041	Metagenome / Metatranscriptome	130	Y
F064990	Metagenome / Metatranscriptome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207945_100034	All Organisms → cellular organisms → Bacteria	2132	Open in IMG/M
Ga0207945_100784	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
Ga0207945_100859	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
Ga0207945_101215	Not Available	527	Open in IMG/M
Ga0207945_101232	Not Available	525	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207945_100034	Ga0207945_1000342	F016708	MSKQRREQSQDSIFVDNPFVDGFLEWMGSREGRQCIEVRDVLWGLLEDVELDAKQRQLIWPDAERLDLVQSIQRIQKLYPDFPGHEIEEVSLNWIDMGYNPENYSQAQLNELDGLTERWVADHLRN
Ga0207945_100784	Ga0207945_1007841	F012706	EGEAKGVYNATFYATITMLVKPDRTIDYEVRQIHTTSDGDTVLVYYKGKSIIESPTHNKFVGETTFQTSSKKLAWLNGMKARHEGEYNPVAGENDFRVYGKR
Ga0207945_100859	Ga0207945_1008591	F063041	MADRLEFEIDVELETGLITGHAGVPGLIEAFRQTGTAAVIDREIKLKSRKRGLSASEMVESLLAMWAAGGERAEDLDQFRQDKALALLLGHELPAAQTARDFLAQFHAEDLPLLQEGKSSVPAESVPLLSLAKANAELVLDMQCRRPVKTATLDVDAT
Ga0207945_101215	Ga0207945_1012151	F062944	LPLSRRFTPEHPPGENCSFGIDFSFIVPPGVGLASGTLAILTNSAAPTDASADWTVGPVTVRGRALYAMLTGGVAGTDYQLKFTAVDTAGNTWPRTALVLCADTS
Ga0207945_101232	Ga0207945_1012321	F064990	VISATLLLAALAATAAIAVVFLRSMGVTRDHPWIRQLASRPWRDGQDVLRVAMNHLPDVFVVAPSGALFAPNVVEIQLNPEDLASLCDRIELSVVTASVTEFYEEQIAKYRARFATPERAEVYLLADEWVPRGRYRLRQGHPATAAAQREFAYAVPRYSDADADLNEWDWREPGP

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