NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027443

3300027443: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K4-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027443 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072110 | Ga0207477
Sample NameSoil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K4-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19542208
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1
Not Available5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)42.4Long. (o)-85.37Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010550Metagenome / Metatranscriptome302N
F017166Metagenome / Metatranscriptome242Y
F019338Metagenome / Metatranscriptome230Y
F033862Metagenome / Metatranscriptome176N
F035945Metagenome / Metatranscriptome171Y
F050357Metagenome / Metatranscriptome145N
F052573Metagenome / Metatranscriptome142Y
F058652Metagenome / Metatranscriptome134N
F087168Metagenome / Metatranscriptome110N
F094026Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207477_100016All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2145Open in IMG/M
Ga0207477_100521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium962Open in IMG/M
Ga0207477_101590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium687Open in IMG/M
Ga0207477_101839All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium658Open in IMG/M
Ga0207477_102726Not Available577Open in IMG/M
Ga0207477_102989Not Available561Open in IMG/M
Ga0207477_103108Not Available554Open in IMG/M
Ga0207477_103308Not Available543Open in IMG/M
Ga0207477_103873Not Available514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207477_100016Ga0207477_1000163F033862MPRDPFAELEAARATVLEESERFVGELQPVLGPSLHAGFERLRLAQPEHVGRLDGPTLAALGTAVDRAIELGVAETVERLHSPEIWLSPLTAPELPPRVDPARPLGLPEWVARLGGSTREGSSLGRLDDMTNRIWVAISAAARPLDPVLEEFGFRPERRRLGGGSFGVAARTLPQLDPSGAVAQRWKRYRAAYERLTTLAAFDA
Ga0207477_100521Ga0207477_1005212F052573VRRARALAAAPVFAIVLFAACSTGETQVQGGSTSPTGPTETGPTATGPTGTTAEAGLGGAVQLDLSQVDNSTGATMFSCDGVEGTWTYDPGQLDIEGVEITMEPAQVDMSGGTGTLVISGQVQLPGAGGAGFTDTVKLRITGTADAPALEAAGVHVEATGAL
Ga0207477_101590Ga0207477_1015901F058652STAMSGERGDSWNSSWKPLGCRADVVTCAELSAVGSPDHALVMCDLCDRESLVRLGEQFLCASCAMDVLREGVEDLDAVAGARSADQIEILTWGEPETVLAHGLEVGRMVREGTMQLVDAAAAHHQALARSMKRAREAAECVRRVEAGAVLFNVWAFSFDARLEDLEEQNRALRLVVRELERHVARIPIVRTPA
Ga0207477_101839Ga0207477_1018391F087168MGDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRGGKKQEAKESSWIPAGMAEAGDRLATASGFSGRLEAMLEQAELPMKAGEFAALIVLCAVAGGILGALLLE
Ga0207477_102726Ga0207477_1027262F035945MSDFSHEPERISRLEAWSLALATALVALIAIGIVPHMH
Ga0207477_102989Ga0207477_1029891F050357VEGIRLWRANRQKLVGMVYLDKGVLDLDIQDDHERALVEEVFEQTGQVTWSFSRFDEGEWQENVAEPRTERWLWFVVANILYPMGYQADLGVGEDG
Ga0207477_103062Ga0207477_1030621F094026TDAMKPCPNSCATRVSSFGVDGIPDARGVHRIATAQDIEVAGTESEQPSDSYWVGFTVGSVVYVMELHGPPGGSVSEEQSQEIASAYYDRLKGN
Ga0207477_103108Ga0207477_1031082F017166GEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQGAEIDITATHDFDRKK
Ga0207477_103308Ga0207477_1033081F019338GAFLIVGAIVCLSTAQFVFAQEVDPRCKDIYDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEAAGGTQTLDGGRVAFPKYYRREGLKFRRSDAIEGYLGCMRAAGRK
Ga0207477_103873Ga0207477_1038731F010550VGDRPRRHDEIKGATVLLTGWSEGREREVADALGTISTEPVDLDDVELPFVALPKTTLEKAEAARDLLVEAGGSVDLQDAWVTRDAPRPVAARPTCPFCGSTKTQPYTHAGPAARTSMKCTTCGQR
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