NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027448

3300027448: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K5-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027448 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072119 | Ga0207446
Sample NameSoil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K5-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5265938
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)42.4Long. (o)-85.37Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025757Metagenome200N
F032466Metagenome / Metatranscriptome180Y
F045439Metagenome / Metatranscriptome153Y
F057488Metagenome136N
F067149Metagenome / Metatranscriptome126N
F082749Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207446_100712Not Available701Open in IMG/M
Ga0207446_100722Not Available698Open in IMG/M
Ga0207446_101055Not Available621Open in IMG/M
Ga0207446_101258Not Available583Open in IMG/M
Ga0207446_101653All Organisms → cellular organisms → Bacteria531Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207446_100712Ga0207446_1007121F057488AQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDR
Ga0207446_100722Ga0207446_1007221F045439MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIW
Ga0207446_101055Ga0207446_1010551F025757GTHRPSPCPYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSGFGLSIGATLVFLASGLLIGFWVVHRWTEPAQRRESQPGQKA
Ga0207446_101258Ga0207446_1012582F067149ARLLPHHSGPTTMRKTIILAAATLLLACVTVVTGVARTIEGPSTNLASLVVSPHTIGGLTARILNAI
Ga0207446_101653Ga0207446_1016531F032466MTARGIDVVRAHLAKLPPSASLSIAERRAQYDRAE
Ga0207446_101894Ga0207446_1018941F082749PKFHVPRIPFPRAAPRTQPYHCIAHSAFAANATGEGRLAPAFARRGGMDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS
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