NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027484

3300027484: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A1-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027484 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091571 | Ga0207458
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A1-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43519500
Sequencing Scaffolds26
Novel Protein Genes26
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Archaea4
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001437Metagenome / Metatranscriptome695Y
F002275Metagenome576Y
F003605Metagenome / Metatranscriptome477Y
F005305Metagenome / Metatranscriptome405N
F007076Metagenome / Metatranscriptome358Y
F013352Metagenome / Metatranscriptome272Y
F014308Metagenome / Metatranscriptome264Y
F014557Metagenome / Metatranscriptome262Y
F016026Metagenome / Metatranscriptome250Y
F016054Metagenome250Y
F016993Metagenome / Metatranscriptome243Y
F019332Metagenome / Metatranscriptome230Y
F022685Metagenome / Metatranscriptome213N
F022740Metagenome / Metatranscriptome213Y
F023626Metagenome / Metatranscriptome209Y
F037759Metagenome / Metatranscriptome167N
F050525Metagenome / Metatranscriptome145N
F054332Metagenome / Metatranscriptome140Y
F057488Metagenome136N
F068281Metagenome125Y
F077451Metagenome / Metatranscriptome117Y
F077831Metagenome / Metatranscriptome117Y
F078683Metagenome / Metatranscriptome116Y
F087799Metagenome110Y
F090362Metagenome / Metatranscriptome108Y
F100022Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207458_1000001Not Available42488Open in IMG/M
Ga0207458_1000094All Organisms → cellular organisms → Archaea2064Open in IMG/M
Ga0207458_1002710Not Available813Open in IMG/M
Ga0207458_1002839Not Available800Open in IMG/M
Ga0207458_1003560All Organisms → cellular organisms → Bacteria742Open in IMG/M
Ga0207458_1003698Not Available733Open in IMG/M
Ga0207458_1004137Not Available706Open in IMG/M
Ga0207458_1004174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium704Open in IMG/M
Ga0207458_1004303All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium697Open in IMG/M
Ga0207458_1004583All Organisms → cellular organisms → Archaea684Open in IMG/M
Ga0207458_1004597Not Available683Open in IMG/M
Ga0207458_1006423All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium612Open in IMG/M
Ga0207458_1006427Not Available612Open in IMG/M
Ga0207458_1006589All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria607Open in IMG/M
Ga0207458_1007384All Organisms → cellular organisms → Bacteria → Proteobacteria582Open in IMG/M
Ga0207458_1007686All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium575Open in IMG/M
Ga0207458_1007922Not Available569Open in IMG/M
Ga0207458_1008128All Organisms → cellular organisms → Archaea564Open in IMG/M
Ga0207458_1009381Not Available536Open in IMG/M
Ga0207458_1009841All Organisms → cellular organisms → Bacteria → Proteobacteria527Open in IMG/M
Ga0207458_1009859All Organisms → cellular organisms → Bacteria527Open in IMG/M
Ga0207458_1009884All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium526Open in IMG/M
Ga0207458_1010195All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium520Open in IMG/M
Ga0207458_1010406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium516Open in IMG/M
Ga0207458_1010690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium511Open in IMG/M
Ga0207458_1011144All Organisms → cellular organisms → Archaea503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207458_1000001Ga0207458_100000121F003605VAIGDAAAAEGYPLVPDSGEEGKVKWGARELNRTRDFIANLKVLLPSSKAASRSAAGISSGTAEPTGGTDGDIYFKILP
Ga0207458_1000094Ga0207458_10000942F013352MKYTLPGKLLTNSIDKYFPECLTKNSHFASQFSSPPCLSIAIAGFLFSLMASSTNAQIEVTVDENVSNPIFNSTLSEDAEPRPDILYSALNKDTIVGEVLNNFSYPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGSRSGFDIFLDETLPSKSKYALTTSFEKSEDDKPEVLQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVTDTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEFSLITDNGQNNTISQQ
Ga0207458_1002710Ga0207458_10027101F022685MVRPLSSHYLSGVRFGDVFGLAFGIALMSALQTVGVWSLQEHIKSQSNAGLPIGNTPVVGNFDADALKNGILPKLGPIDTSEGQRLAIEGAARRIDLQNRAVQKYLPR
Ga0207458_1002839Ga0207458_10028391F057488VPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHAIAEINLVGKASSTTTTSLLQQIDAGL
Ga0207458_1003560Ga0207458_10035601F054332SDYPSLKPTVVASAYGMPRAMPMDYAINRGDQIEVVRGLPQNTSSDKIEFVRTQPRSIGEPQVVAAGFDWKDAGIGAGFALALVLLGGGAALASRHVGRAQTA
Ga0207458_1003698Ga0207458_10036981F087799SPPRYTELASGIRPGQKLRVAVLELPFARDSWLVISPAGIAGPFHLPRSHRAWRPIATAESYAETTRCNRYAYRFGGLELAHADGSWRTMRRASTLQDPGWRLRRHGASAFSATTA
Ga0207458_1004137Ga0207458_10041372F068281SALGQKRTSAKSHLLILSAQKKDRLVAFPVGTSAVQSELTIMTYQSDARRDKRDDKFYISWIIRGGIVLAIVIAVLAFISTGTYPDLDAPQITTTVPGPAS
Ga0207458_1004174Ga0207458_10041741F019332MRDELARAYDFLARGDMGGTRVEETPSGRVVFTDELPRRLDGNYLWVNRNAEPEELVAEAEQHERRLIFVPDPELGDRLAPWFERQGWRVDRHVVMVQLRKAERGADLSVVQELREEDLRPARREVLSGHSWATEEVLDHIFAAKRVIGERVRARFFGAVVDGEVVSYSDLYQDGADAQIED
Ga0207458_1004303Ga0207458_10043031F077831SKVCCTGTTINTSLSPTTVFKNNTYHWRVRALDLDGHAGQWNVGPSFKKSFDNVAPDGPVPGTSIKNLRMRDNLADPGTDVEPGTAGYQTHVPVVRWDPVPGAASYELQVAQWNGACAWAASTYVKKTSVPEWTPFGNPLANNPVIWQGTLGDDRFGMLTAPGSYCIRVRARSDRSPINQEVWGDYTYLQNGGTDSTLPAGPAFTWSDYPDPADAGNSTPCLAGYPCAADYV
Ga0207458_1004583Ga0207458_10045831F005305TIRFMEDLEKELGPLIENFQNLVKDAKSKKLESLREDEDFKKEFNQLSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLVTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207458_1004597Ga0207458_10045972F014557MNGQRSFDRGIARAMTRRQFLARLARASAAATLVSSTLGCGRVRGAIARLGSTEEPIFNSVQEEVVEKIIDGFNPPDTEIRQRLAREDPDYDPVAVYAQYAWASGDEFLASMRFLVDFVNVLPTFTRTFSTRYGLPARLELRRFHPVDANRYFLFLRDS
Ga0207458_1006423Ga0207458_10064232F100022MKLPPDVEFHDDIRLLIYRPHGVIDEAAVQRVVDVLEELEEKLQKPFDRFSDTLEAHDVELNFKYVIQVSLCRRLSYAGHPPV
Ga0207458_1006427Ga0207458_10064271F022740MARALKRLGAENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFVSVGGQPVNVSRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIKKLGW
Ga0207458_1006589Ga0207458_10065891F023626MTLALLVVAGVTFSLLFGLVHKVSERRTKRRLQQQWEERER
Ga0207458_1007384Ga0207458_10073842F037759AGGLLGGAARAQPPELGASSIGILPPPDILESVRYLGLDPKGEPVRRGAYYMLHAFDRAGIELLVVVDAQFGDVLFMAPALNTSLTPPYVRAARIIQVEPPESGGQQKK
Ga0207458_1007686Ga0207458_10076861F077451GRNSTAGRWAGLAASFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL
Ga0207458_1007922Ga0207458_10079221F050525FDAWVVALGVILMRGFAGLLAYLAGVSAIFGIGIVGLMALHSPTGRTPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQTHKKVHVTRKQHEAPSIDAGRNAYGYAEEPRRIDPNRFLFFGR
Ga0207458_1008128Ga0207458_10081282F016054MVESLLENEKEPDVYELGVAEGIKEMLALRGFTKEKILNSTVNNLAETLQIDYYVALIIYNSAKKN
Ga0207458_1009381Ga0207458_10093812F078683LREAGDEGAPLVETDPEAEPAREIIAAAEAIAGAKREQGVGIVKSLPVVG
Ga0207458_1009841Ga0207458_10098412F014308IFPPELEVAFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA
Ga0207458_1009859Ga0207458_10098591F002275MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIKSFTVSMRTADDRWKAMWSILSGRELTQPIEYGVT
Ga0207458_1009884Ga0207458_10098841F001437FLFRLETVDGAPAEPPTFATAVPNWSPGDVIPLGNRALRVIGKRDDDAEQPPVLIVEEA
Ga0207458_1010195Ga0207458_10101951F007076GLDVLVPPRLWQDCQLQTVAEPNAMQTAVCLPPNGLPDRWQISMYANGAALRRAYTSAVGRESIERNSGRCTAFSWGGERQWMHGPGKPGGRIFCYFDGDDAVAVWTHQRLGQPTHRDVLIEARESGSDHADLTRWWRPWHHQIGKAD
Ga0207458_1010406Ga0207458_10104061F016026VARVEIGGGREGQEVWARWIDGRVQGDREFLLAAGLDPDTRFEDPHAFAKLIEGLLDEGSATIVLDVPPRPA
Ga0207458_1010690Ga0207458_10106902F090362VLFVVALIVFAVESLGWPMAKGRDTWDYLAYYLQLLDRDPSLSELQVFRTPLTPIVVGAP
Ga0207458_1011144Ga0207458_10111441F016993ILFFPETLIIISTRKTLMNKSGILGMIIVLSVAVLGSTIVNTYGAQHVEAAKSDLAFLWCYSTLNSPNDFLCYSNHGECSMVQSADDDAKSGCLRKKNGS
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