NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027606

3300027606: Agave microbial communities from Guanajuato, Mexico - At.P.rz (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027606 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053055 | Gp0104143 | Ga0209370
Sample NameAgave microbial communities from Guanajuato, Mexico - At.P.rz (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size442779093
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae1
All Organisms → Viruses → Predicted Viral1
Not Available4
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis4
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAgave Microbial Communities From California, Usa, And Mexico
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant surface

Location Information
LocationGuanajuato, Mexico
CoordinatesLat. (o)20.6863Long. (o)-101.8747Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002466Metagenome / Metatranscriptome557Y
F004469Metagenome437Y
F042608Metagenome158Y
F044772Metagenome154Y
F046122Metagenome151Y
F071719Metagenome122Y
F076265Metagenome118Y
F097652Metagenome / Metatranscriptome104Y
F099947Metagenome103Y
F103986Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209370_1000572All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae46020Open in IMG/M
Ga0209370_1043725All Organisms → Viruses → Predicted Viral1223Open in IMG/M
Ga0209370_1064182Not Available922Open in IMG/M
Ga0209370_1080961Not Available778Open in IMG/M
Ga0209370_1081841Not Available772Open in IMG/M
Ga0209370_1090223All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis720Open in IMG/M
Ga0209370_1111838All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis618Open in IMG/M
Ga0209370_1117548All Organisms → cellular organisms → Bacteria597Open in IMG/M
Ga0209370_1126038All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis568Open in IMG/M
Ga0209370_1144629Not Available517Open in IMG/M
Ga0209370_1145578All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209370_1000572Ga0209370_100057245F097652MANWVFITPTVDEAPFAWSPLMERFRLTRGVSVVEVSPGQYETTRYDAYTNELGAENLPQNPNQDTEFWPAERAGLHYFRGGYEWIVDDQIRSDIIASGAATAANFTPV
Ga0209370_1043725Ga0209370_10437251F071719QFQYHFQDNSSSFHQNNEPINYEKMLEAMTHAQNARNRDIDMMVESLRSHRPDVTYHSVRAEESCCFENQDSISEQPFELAQTPNFEKDIDSLASYSFPEIELENEYDLEPQLSDSILLPDSIMTPVSSPDFNLFPESTLDPVPIHNEIESPIFEDHIELDQLYNFENPIDKLASSQFFDIELNEICDLDSQICDPVQLSESILTPVVLPNLSNILESVLIPPPIIPELESPI
Ga0209370_1064182Ga0209370_10641821F103986MVLVVHKGIYYVPDEESTLAKVSSDPLHQSCLLARDGQGKYGGEEVTVDTAAGRILFLSHPRSNIKDSSCLLDGLLGEEMFINEGLPDFLLPPDLKNTIALSLVS
Ga0209370_1071305Ga0209370_10713052F042608AQKREAQLAAQEAVEAISSDLRSLEAEEAEVGSAIDASNSALFDAEDKIKRAEEMIRKANLLLSKATQMRHEESARLKQLRARSEELAERKSSQRATLAETEARLAQAVDFDAAELRSQALAQAEDDRRTRLASLGDRIRSYHVRL
Ga0209370_1080961Ga0209370_10809611F099947MATPLGKKFSTAENQVSQCDEQTFGSNSEFRKAGAARAPLAKSSRKVSAETEKVLCEPTAVIWRNKEARPQSDSFACENLVVQFDQGRFEEVLSGGGPMLRARKHRRVSTTKVSNQKPEAEFRQHPSASRVANQVPCEPKSPLPRRVWKPKQKSSTEASGVATPKPRLSREEKGKMPVCSNHRVKTAIIPSPNSRAAMPRAGLVLMSEATVPQRTRRVHDREAEAKV
Ga0209370_1081841Ga0209370_10818411F004469MSLFLKALGYNVYLATTNNAYCIDGKNLEANTKALNALKSTLNDDYLFRVANIDMAFVVWNTLISLGENEQYLAGSDSDVGSDTSNKCYMVQGDDPLEVNTESDDEDASMSYDELNSLCQLLLERYDIIKKENKILKKDIACMHNEHDSCRDNIACLEKNNKDLKKNIDCMHVENDSFRNKLACLEKEKEDLKNENVSL
Ga0209370_1090223Ga0209370_10902231F044772LKRVGLYPAVRAVQWGVPMSSHNFFGILERYNPRTGTFFTPVGEMGLALHELYEVSGLSSGDIPYEEFVPTTRELRLLEKESPQVYETYWEVMCHFYICGQTTAWRSGGVKQLSWADYLFNNVSNKDLPVIRLAPSSGGEVEDRIDAASDKFYTTESNEDGFDPDLVFESFHHQARTPISDQALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAHGHPIALLPAVVAGIQSGLRV
Ga0209370_1111838Ga0209370_11118381F044772GVLERYNPLTGTFFTPVGEMGLALHELHEVSGLATGDSPYEEYVPTTEELNLMKKGSPQVYETYWEVLCHFHICGQITSWRARGVKQLSWASYLFNGVNQKDHPVTRLAPSSDEEITDRIQASVDSYTTESNEDTFEPDTVFESFHHQARVPISNRALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAYGRSIALLPAMVAG
Ga0209370_1117548Ga0209370_11175482F076265MSDVPDPPPDRAESRAIELLRLVGSQTPSISSRFNTEVVARARAQRAFAVPLRALGGVVAAMAEALTSLIGIRGNR
Ga0209370_1126038Ga0209370_11260381F044772MGLALHELHEVSGLSTGDIPYEEYVPTAVELRYVKEEFPLIYETYWEVLCHFHICGQITKWRSQGVKQLSWASYLFNNVNTKDHRITRLDPSSDREIEDRIDQAPNSFYTTESNEDGFDPDLVFESFHHQARTPISDRALLAGFLML
Ga0209370_1144629Ga0209370_11446292F002466PEGSEPFDVTLPDGYEPGAHQAEFEAAAKQAGWTIERDGPTIIVRDVWTENEDHAAWLVATKAGLPLERVTVWAGRSA
Ga0209370_1145578Ga0209370_11455781F046122DEEGEWIINDDISFDYPASIESIKSIMDGSLRMPVHEPSSAITSVEVIEGATLVIPPSKQGQSPIIFGRARPGRFSTTDSSSDSEVPQFFHYAPSARHIMKKMGYNLKQGAGLNFGKGRRGLMRNSVPRGKPANYYDSTRRGLGYVTPTSSTTVPVKGDGSIPSQSTSSSE
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