Sample 3300028031

Overview

Basic Information
IMG/M Taxon OID	3300028031 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046784 \| Gp0296317 \| Ga0256847
Sample Name	Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - Teddybear
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	604341212
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Pacific Ocean: East Pacific Rise
Coordinates	Lat. (^o)	9.8472	Long. (^o)	-104.2975	Alt. (m)	N/A	Depth (m)	2514
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008223	Metagenome / Metatranscriptome	337	Y
F025751	Metagenome	200	Y
F028441	Metagenome / Metatranscriptome	191	Y
F038463	Metagenome / Metatranscriptome	166	Y
F074897	Metagenome / Metatranscriptome	119	Y
F074900	Metagenome	119	Y
F079616	Metagenome	115	Y
F087322	Metagenome	110	Y

Family

Category

Number of Sequences

3D Structure?

F008223

Metagenome / Metatranscriptome

337

F025751

Metagenome

200

F028441

Metagenome / Metatranscriptome

191

F038463

Metagenome / Metatranscriptome

166

F074897

Metagenome / Metatranscriptome

119

F074900

Metagenome

119

F079616

Metagenome

115

F087322

Metagenome

110

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256847_1000086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	63185	Open in IMG/M
Ga0256847_1000205	Not Available	41101	Open in IMG/M
Ga0256847_1001095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	14705	Open in IMG/M
Ga0256847_1006752	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	4475	Open in IMG/M
Ga0256847_1030870	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2008	Open in IMG/M
Ga0256847_1057024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1425	Open in IMG/M
Ga0256847_1129661	Not Available	872	Open in IMG/M
Ga0256847_1177704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	717	Open in IMG/M
Ga0256847_1212488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	641	Open in IMG/M
Ga0256847_1215877	Not Available	634	Open in IMG/M
Ga0256847_1220083	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	627	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256847_1000086

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

63185

Open in IMG/M

Ga0256847_1000205

Not Available

41101

Open in IMG/M

Ga0256847_1001095

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

14705

Open in IMG/M

Ga0256847_1006752

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis

4475

Open in IMG/M

Ga0256847_1030870

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

2008

Open in IMG/M

Ga0256847_1057024

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

1425

Open in IMG/M

Ga0256847_1129661

Not Available

872

Open in IMG/M

Ga0256847_1177704

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium

717

Open in IMG/M

Ga0256847_1212488

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

641

Open in IMG/M

Ga0256847_1215877

Not Available

634

Open in IMG/M

Ga0256847_1220083

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia

627

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256847_1000086	Ga0256847_10000861	F028441	MTLKQLIKLEDKSKEVWVISPTLHYDIDNKDFSELVSVNLGEKTKYRYIVPATSTVIKNLTAYKKMYDVTEVDIENNFLILPESEFNPFITETAIYDASEACIACAAPALEDSNDVIKFNEETSKGMAKAFKALWKKYKRKNP
Ga0256847_1000205	Ga0256847_10002052	F038463	MTLPKRVFASPLIEYANFEDGSHVNLIKLIKPYANGRCYAVHETTKSIFCSNGMFGSYDAAKRKFDLMVVNGGLESTLVEQAETGNAK
Ga0256847_1001095	Ga0256847_10010956	F079616	MNDTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEAKSPRSGYNAFAASRFRRVDYNFAENVMTELQPKEYEVAAIENYELSMLN
Ga0256847_1006752	Ga0256847_10067525	F087322	VDLQALRFGLVLTLLLVLRIIHAGTADVCLVFLSRRIFLPEDLRAAIDFQARRALFK
Ga0256847_1030870	Ga0256847_10308704	F079616	MNNTFEIGEIVVCVNAKRRWYRLGGLEENEMYTVTGFNPYDGGLILKEAKSPRSGYNAFAVSRFRKVDYNFAENIMTELQPKEYEVAAIKNYELSMLN
Ga0256847_1057024	Ga0256847_10570242	F074900	MTAKIVNLADPDERERSYATVEEAERALSAMVEKFKTQGYRVDQQHPPNEKYPQFAVYDFSDAWIGTYAIEL
Ga0256847_1129661	Ga0256847_11296612	F008223	TTTDVINKIIDRFTTATIMGIDREELGRYPARQFKVMAFHYGAIEYLCNTYDFDETQTLGVFVIFVDKYFNMPITETGSISERLQGFRSNPDELRYLEAGCHIFQRWHEQNDRRAPLELGEMLKTN
Ga0256847_1177704	Ga0256847_11777041	F025751	MDSETRMWERLYRLLAQDDWDQTVYVYRVDASGKTIKPYLAKWGMHAELLNSLRDDFGSGEYHLMIRQGNTMLFTGAIGVERPLRR
Ga0256847_1212488	Ga0256847_12124881	F074897	MQFPQLEPKTRRIAEQIAREALVSTEVLADELQQYVEELEGHSSNDGFFDHDVANRIAALCWKLLDALPVEPEERQHRLTQVAINYFVLAEDAQDDNHSLAGFDDDLQVVTAV
Ga0256847_1215877	Ga0256847_12158771	F025751	MDSETRMWEHLYRLLAQDDWDQTVYVYCVGASGKTIKPYLAKWGMHAGLLDCIRDDFGSGEYHLMIRQGKTLLFTGTIGVERPLRR
Ga0256847_1220083	Ga0256847_12200831	F079616	MNNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPKSGYNAFAASRFRKADYNFAENVLTELQPQEYEVAAIKNYELSVLN

Scaffold ID

Protein ID

Family

Sequence

Ga0256847_1000086

Ga0256847_10000861

F028441

MTLKQLIKLEDKSKEVWVISPTLHYDIDNKDFSELVSVNLGEKTKYRYIVPATSTVIKNLTAYKKMYDVTEVDIENNFLILPESEFNPFITETAIYDASEACIACAAPALEDSNDVIKFNEETSKGMAKAFKALWKKYKRKNP

Ga0256847_1000205

Ga0256847_10002052

F038463

MTLPKRVFASPLIEYANFEDGSHVNLIKLIKPYANGRCYAVHETTKSIFCSNGMFGSYDAAKRKFDLMVVNGGLESTLVEQAETGNAK

Ga0256847_1001095

Ga0256847_10010956

F079616

MNDTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEAKSPRSGYNAFAASRFRRVDYNFAENVMTELQPKEYEVAAIENYELSMLN

Ga0256847_1006752

Ga0256847_10067525

F087322

VDLQALRFGLVLTLLLVLRIIHAGTADVCLVFLSRRIFLPEDLRAAIDFQARRALFK

Ga0256847_1030870

Ga0256847_10308704

F079616

MNNTFEIGEIVVCVNAKRRWYRLGGLEENEMYTVTGFNPYDGGLILKEAKSPRSGYNAFAVSRFRKVDYNFAENIMTELQPKEYEVAAIKNYELSMLN

Ga0256847_1057024

Ga0256847_10570242

F074900

MTAKIVNLADPDERERSYATVEEAERALSAMVEKFKTQGYRVDQQHPPNEKYPQFAVYDFSDAWIGTYAIEL

Ga0256847_1129661

Ga0256847_11296612

F008223

TTTDVINKIIDRFTTATIMGIDREELGRYPARQFKVMAFHYGAIEYLCNTYDFDETQTLGVFVIFVDKYFNMPITETGSISERLQGFRSNPDELRYLEAGCHIFQRWHEQNDRRAPLELGEMLKTN

Ga0256847_1177704

Ga0256847_11777041

F025751

MDSETRMWERLYRLLAQDDWDQTVYVYRVDASGKTIKPYLAKWGMHAELLNSLRDDFGSGEYHLMIRQGNTMLFTGAIGVERPLRR

Ga0256847_1212488

Ga0256847_12124881

F074897

MQFPQLEPKTRRIAEQIAREALVSTEVLADELQQYVEELEGHSSNDGFFDHDVANRIAALCWKLLDALPVEPEERQHRLTQVAINYFVLAEDAQDDNHSLAGFDDDLQVVTAV

Ga0256847_1215877

Ga0256847_12158771

F025751

MDSETRMWEHLYRLLAQDDWDQTVYVYCVGASGKTIKPYLAKWGMHAGLLDCIRDDFGSGEYHLMIRQGKTLLFTGTIGVERPLRR

Ga0256847_1220083

Ga0256847_12200831

F079616

MNNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPKSGYNAFAASRFRKADYNFAENVLTELQPQEYEVAAIKNYELSVLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028031: Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - Teddybear

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences