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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028060 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131983 | Gp0293666 | Ga0255359 |
| Sample Name | Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T25 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 62811171 |
| Sequencing Scaffolds | 39 |
| Novel Protein Genes | 39 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 20 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 9 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. MEBiC 03485 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peatland Microbial Communities From Stordalen Mire, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → peatland → peat soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0466 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004745 | Metagenome / Metatranscriptome | 425 | Y |
| F004917 | Metagenome | 418 | Y |
| F011470 | Metagenome / Metatranscriptome | 290 | Y |
| F014730 | Metagenome / Metatranscriptome | 260 | Y |
| F016394 | Metagenome | 247 | Y |
| F017269 | Metagenome | 241 | Y |
| F017852 | Metagenome / Metatranscriptome | 238 | Y |
| F018557 | Metagenome / Metatranscriptome | 234 | Y |
| F020133 | Metagenome / Metatranscriptome | 225 | Y |
| F022119 | Metagenome / Metatranscriptome | 216 | Y |
| F032702 | Metagenome | 179 | Y |
| F035155 | Metagenome | 172 | Y |
| F035822 | Metagenome | 171 | Y |
| F055369 | Metagenome | 138 | Y |
| F056181 | Metagenome | 138 | N |
| F059923 | Metagenome | 133 | Y |
| F060564 | Metagenome | 132 | Y |
| F067249 | Metagenome | 126 | Y |
| F070789 | Metagenome / Metatranscriptome | 122 | Y |
| F078013 | Metagenome | 117 | Y |
| F079498 | Metagenome / Metatranscriptome | 115 | N |
| F080259 | Metagenome / Metatranscriptome | 115 | Y |
| F085866 | Metagenome | 111 | Y |
| F086361 | Metagenome | 111 | N |
| F088780 | Metagenome | 109 | Y |
| F092956 | Metagenome | 107 | Y |
| F093367 | Metagenome | 106 | Y |
| F094765 | Metagenome / Metatranscriptome | 105 | N |
| F094766 | Metagenome | 105 | Y |
| F098235 | Metagenome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0255359_101402 | Not Available | 4186 | Open in IMG/M |
| Ga0255359_102188 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 2950 | Open in IMG/M |
| Ga0255359_102766 | Not Available | 2450 | Open in IMG/M |
| Ga0255359_102939 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella | 2340 | Open in IMG/M |
| Ga0255359_103157 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 2207 | Open in IMG/M |
| Ga0255359_105073 | All Organisms → cellular organisms → Archaea | 1530 | Open in IMG/M |
| Ga0255359_105134 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1517 | Open in IMG/M |
| Ga0255359_105399 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1465 | Open in IMG/M |
| Ga0255359_107872 | Not Available | 1134 | Open in IMG/M |
| Ga0255359_108218 | Not Available | 1100 | Open in IMG/M |
| Ga0255359_108359 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1090 | Open in IMG/M |
| Ga0255359_109500 | All Organisms → Viruses → Predicted Viral | 1002 | Open in IMG/M |
| Ga0255359_110001 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 970 | Open in IMG/M |
| Ga0255359_110298 | Not Available | 953 | Open in IMG/M |
| Ga0255359_113050 | Not Available | 820 | Open in IMG/M |
| Ga0255359_113273 | Not Available | 811 | Open in IMG/M |
| Ga0255359_113350 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 808 | Open in IMG/M |
| Ga0255359_114118 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 778 | Open in IMG/M |
| Ga0255359_114495 | Not Available | 766 | Open in IMG/M |
| Ga0255359_115089 | Not Available | 747 | Open in IMG/M |
| Ga0255359_115368 | Not Available | 738 | Open in IMG/M |
| Ga0255359_115418 | Not Available | 736 | Open in IMG/M |
| Ga0255359_115925 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 720 | Open in IMG/M |
| Ga0255359_117706 | Not Available | 674 | Open in IMG/M |
| Ga0255359_120053 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. MEBiC 03485 | 620 | Open in IMG/M |
| Ga0255359_120528 | Not Available | 610 | Open in IMG/M |
| Ga0255359_120564 | Not Available | 610 | Open in IMG/M |
| Ga0255359_120870 | Not Available | 604 | Open in IMG/M |
| Ga0255359_121596 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 591 | Open in IMG/M |
| Ga0255359_121643 | Not Available | 590 | Open in IMG/M |
| Ga0255359_121969 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 584 | Open in IMG/M |
| Ga0255359_122123 | Not Available | 581 | Open in IMG/M |
| Ga0255359_122645 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 573 | Open in IMG/M |
| Ga0255359_123007 | Not Available | 568 | Open in IMG/M |
| Ga0255359_123127 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium | 566 | Open in IMG/M |
| Ga0255359_125103 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885 | 537 | Open in IMG/M |
| Ga0255359_125233 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 535 | Open in IMG/M |
| Ga0255359_126135 | Not Available | 523 | Open in IMG/M |
| Ga0255359_126445 | Not Available | 519 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0255359_101402 | Ga0255359_1014021 | F056181 | LLAYYSYNVSPIANVLLMVGIGALFVGAVTVFLNTERFISQKVAEDLNLSSVIVVDDLLRDLRVKNRGVYLPSSTTGTNVKVFIPLRREYEVPAKAHLTEDRAFLIDLANPAQEGVLLKPLGYHLFAHTTRDLKVDWRDAEAETEGAEDFQQDREQQDTLADKLQAVLVKGLELADKVVVSQSDGELNVRLHNTPYIGTCRSIGEEAPQVCEQIGCPLCSMIACIYTEYADTASVLEEARSEDNDIIIRCSGLARS |
| Ga0255359_102188 | Ga0255359_1021881 | F078013 | MTRGIERDDCNIDNVDELHAMRDEALTNVKAPPPSEYDIAQFKEAFADNEENSDYDRQERNAKQRALIWYSDTLYSASELLVIMPKVVPDYNEFDGSKTIQLLTSMYPEAYFLPSREYGVAIFIYPPNGTTALKKPNEI |
| Ga0255359_102766 | Ga0255359_1027661 | F017852 | TSPLLPKKLGALEKKHGIKRVGAWTVIPEHLTVWVYEAPSSESLQKFSMEPDMIKWMAWNTSEIKLAMSIEESIKLLK |
| Ga0255359_102939 | Ga0255359_1029393 | F094766 | MAFLGTRVILSTDARPLLLPPCAYTLPTPQQPENGAQVDSGLRTEPTVTLSFSAHCLDLHGLTAIPAISPAYSILVLRVNVPGRDKPVFVSIGLAGNGMVARTIL |
| Ga0255359_103157 | Ga0255359_1031572 | F059923 | MRRDKSEVDLASDIDEFIHLAQRWNTLHKRLLNTLSRLPQEVYQFTLQNISFHAGQSQTIQVKEINKPYMIILKRTDSESLIAHEIAHAYLNYTKTKNESFDQEAQADELRKKWGFKKKQLCQTFPKGCLDCFNPHCSESKSRKFR |
| Ga0255359_105073 | Ga0255359_1050732 | F085866 | MENFERLSNEVLIRTCSCGIVFKTYDPEKVYHSNKCRTSYYRKRCEAKIVQRRKLKQKKLEEKTKNVD |
| Ga0255359_105134 | Ga0255359_1051342 | F094765 | MTTYQVTSDGDGHDLVASWPDLPERANHPVATFKELKLATAAKSVLNAASRYRWHRWIQLQDEGLFTDERVGADPTERPATAQLPAGSAGASGQPPWLPRLPTSAILGDSPMSDYLEARIEALIPGPGQESAPVEPDASGFTERVSIGNLRPLLWRDWCGHLQTGEHDRLAVELDAELAAMTGSLTGRARQISWYLSAELLIDEDRSRLVPIDKGDDGAERAKVFQKSLVKLLSDLIGLRVESTAVDWDPDNEELLRVYSPKTVVGFWLDPECWYNG |
| Ga0255359_105399 | Ga0255359_1053991 | F070789 | VSYTLDTSETLKRRQATLKRPYPTIVLALMVGTSSIAVFDLYLFASSALH |
| Ga0255359_107872 | Ga0255359_1078721 | F094766 | LSTDARPLLRPPCPLIRPTPQQPENGVQVDSGLRTEPTVTLSLSAHCLVLHGLTACPATSPTYSILVLRVNVPGRDKPVFVSIGLVGNGMVARTILDSLRAA |
| Ga0255359_108218 | Ga0255359_1082183 | F055369 | DWYQLAPAFVATYGTEELQELEGAAVFLEAIEEQDDVSLTEADRACLKALEAWLGMYPEMRTTE |
| Ga0255359_108359 | Ga0255359_1083592 | F018557 | MTEPKNGRPIFFPENLVLFGNLALFLWIVLDSVAFLLYDFITGILFFVLTLILIYGVLHLLGCLRPCYNCIKCTHGMGRLAALYFGRRIFKDYKYNYKLPTAIFFTLYIGGFPAALALYSAIVNFTVIKAAVFVALLVFTIYSALTWRPRRPKTPKEVVQPKAQ |
| Ga0255359_109500 | Ga0255359_1095002 | F055369 | DWPDWYQLAPAFVATYGTEELQELEGASEFLEAIEEQDDVSLTEADRAYLKALEAWLGMYPEMRTTE |
| Ga0255359_110001 | Ga0255359_1100011 | F060564 | MSSFNVTPEQLVIFHECLGSKVCIRIFQVFLANRSLNVSAVSRKVGCNNDRCIEHLKKLGNLGIVQEEFYAGRHSFALKKGDFTDLMQQAISLMDKEEKSK |
| Ga0255359_110298 | Ga0255359_1102981 | F004917 | GPAVDLTSRQADASRELGISLVQRDEAHEEAGVFATMSATSEGVERRNLQGPYTAARRRLGRAERDVTEAAEASETADDALSAQQSVRAVLGSDVRSALDRLEIVDSALATLRRREIATWSSEPPEYVVALLGPRPSDQGRAQRWQQGTVEIEDWRRSVGVIDGSDSPNAWTRALGPPSEGWEGRRRRRVVANVVAVRRDLGLEGTDRARAVNGGPSLDPATAAVLARGTSDRSPSAPRLRDVAQLRPER |
| Ga0255359_113050 | Ga0255359_1130502 | F092956 | MPSKVSRMHDSDDRMLARYQHLYKRALNVKALQLQKIQRAETRELCISALFKAVVICNNTLKEMDVKQYEAGPEQFLLEK |
| Ga0255359_113273 | Ga0255359_1132732 | F016394 | MQIEELSCLSKKVRNSLPNVESFPIATIYTTIKEQEKTKLNLPDFKELIYHLTGWDIPFHVIRRQLEINQIVW |
| Ga0255359_113350 | Ga0255359_1133502 | F098235 | LMVRKGYRNLSLPEQLFKELEAFVEKSNGRYVSVAETVREAVREFLEKQKEP |
| Ga0255359_114118 | Ga0255359_1141181 | F067249 | VIEVKNNAVGGKTLENGKREDPNKMLRVKFNELEATTNVRNFAVIVLSETLLPPRAPYKWRFKEEVIGKENCKVFTLVARQLYPPGGLYIKSNIVEMLQNKQMKKTEEFQQLINYLKCL |
| Ga0255359_114495 | Ga0255359_1144952 | F020133 | MDFSETIEFSKKFPGCRPKVFKGFIEWGIYDPDTEGYVVLADSNLAKKTCFKELEAYVKSHKLRIDHGKDYLMICTFC |
| Ga0255359_115089 | Ga0255359_1150891 | F088780 | VNSLKKIEQGLTALAMAPLAGLEKKERDRRLEERLKRSEQKHGHD |
| Ga0255359_115368 | Ga0255359_1153681 | F085866 | MENFERLSNKVLIRTCSCGIVFETYDPKKMYHSNKCEAIYIRKRKGNMIVQRKRTKAKET |
| Ga0255359_115418 | Ga0255359_1154181 | F004917 | ELSEAADAALFAQQSVRALLGADVRSALDRLEIVDSALATLRRREIAAWSSEPREYVVALLGPRPSDQGRAQRWQQGTVEIEDWRRSLGVSDGSNSPNAWTRALGPPGEGWEGRRRRRVVANLVAVRRDLGLEETDRARAVNGRPLLDPATAAVLARGRSGESTSVPRLRDVAQLGRGR |
| Ga0255359_115925 | Ga0255359_1159251 | F022119 | MGVNLGVTMKCPACDKMLKRVEGVCGEYICINPECLENKKARVQGCAEFYGLTQADINANYHIALTKNRKQK |
| Ga0255359_117706 | Ga0255359_1177062 | F017269 | LAEERKKGQFTIRQRKKKKEIIEESHHQVTLPPDVGDEEKKALEQTGDDATSGW |
| Ga0255359_120053 | Ga0255359_1200531 | F035155 | TSSSSQKRGATKMRNEEPNGTDPPPGFTGDLAADLGASLGWLGAYPKRRLEDPVEDRSRARRGQELAAALSRESELAEGFADERLVLLGDQGHVELRRLCSRPC |
| Ga0255359_120528 | Ga0255359_1205281 | F086361 | PVRIRVWGGQDVVGVCYSAGYTVADGPPYHAAIIEDALRVGFDPLAAIDEVFRMSLPPSVLIVSGLAWDMLDDSTADWFYMQRRALATAGGPDAHRTIEAFKYWWFQEAFNGVLTHHELRYELHQRFEEKFFQWQPALYQYLEGEPSLVLERWVIERGIVKPLSFEYVGVRR |
| Ga0255359_120564 | Ga0255359_1205641 | F011470 | MGHDGPVSDFLVTYLDAIDERLLDYLDEDDELKLDAVQRLRFYTSALLDGSIHPMHVMEDWFDWYALVPAFVATYGSDELRELETGAEFLGAIDEGEEVILTKADLAYLK |
| Ga0255359_120870 | Ga0255359_1208701 | F004917 | RELGISLVQRDEVHEEAGVFATMSATSEGVERRDLQGPYTAARRRLGRAERDVTEAAEVSEAADAALSAQQSVRAVLGTDVRSALDRLEIVDSALATLRRREIAAWSSEPPEYVVALLGPRPTDQGRAQRWQQGTVEIEDWRRSLGITDGADSPNAWTRALGAPSEGWEGRRRRRVVANLVAVRRDLGLEETGRARAVNGG |
| Ga0255359_121596 | Ga0255359_1215961 | F080259 | EYELSLIFGRFGQYLPVPDQSRVKGQNNYVGRIVATIFSLGIYLFWWYYNQMNDPNRHFQVNWPQEDALMAAVQQALR |
| Ga0255359_121643 | Ga0255359_1216431 | F085866 | MENFERLSNKILIRTCSCGIIFETYDPKKMYHSNKCGAIYGRKRNGNMIVQRKRTNAKEA |
| Ga0255359_121969 | Ga0255359_1219692 | F014730 | MKMFEAMVFKREIGANCGVDVTMIDTPNDGLVLSIEEDLVKSNNLLFIRDFVNQHKLYLLLDSERYFISTTVLEA |
| Ga0255359_122123 | Ga0255359_1221231 | F092956 | MPTKVSWMHDSDDRILARYQHLNKKALKVKAFQIRKIQRTETRELCISALFKAVAICNNTLKEMDVKQYEAGPEQFLLEK |
| Ga0255359_122645 | Ga0255359_1226452 | F067249 | IKNDLLLLKNSVDPNQKNFPSNNVKMVIEIKNNAVGGKTLENGKREDTNKVIRTKFNELEATTNVRNFAVIVLSETLLPPRTPYKWRFREEIIGKENCKVFTLVARQLYPSGGLYIKSNIEEMLQKNQMKKTGEFQQLINYLKCL |
| Ga0255359_123007 | Ga0255359_1230071 | F079498 | SLKDPASWQAYVMTGHLEDALAARNQGLMGFNFDIFRQLMRYGVAGYQSDYVLVNDTTMQNYYTQANAAQSNAAVQQILHDANLYAAQQHFVISLAQPSTFNMVQPWIMGAVGANTLGDAVTGAGFGDGSPIAVWINTSLKSSSGH |
| Ga0255359_123127 | Ga0255359_1231272 | F032702 | MQKVDPVLEKTYVLVVRVVNFQNKPIKDVNVKVFRLEKAPITLQQWVENLKNGAPSKRLVLSMNTDNNGNVTAELAMGSYEVKVEKYGLNKVCELTVNDEVLFIEPKKHWWQ |
| Ga0255359_125103 | Ga0255359_1251031 | F004745 | SMNAVRAKLREAVLYIERNPELVKSITAFPYIAKSI |
| Ga0255359_125233 | Ga0255359_1252331 | F035822 | VPLREQIGKKAGEDYLNVPSVVLAGLGFWLIVDGVLSIVKYPKQTFPEQLIRVIRATVG |
| Ga0255359_126135 | Ga0255359_1261351 | F020133 | MDFAEAIEFSQKFPTVHPKIFKGFNEWGIWDTETEGYVVLTDATSDRQLYSNQLEDYVKGHNLRIDQVKDYLMIATLV |
| Ga0255359_126445 | Ga0255359_1264451 | F093367 | GQNTEVLLVDLKMVSKNSNVGKLFDFKENGYGIVTHEARVDYKTWSPVIHILKFTDDKHKDLIKLRFGYCDNTGRLMARPLFLSESELTELGKEVAKDLEMKKMLKGFCDQIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |