NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028118

3300028118: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8h (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028118 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133460 | Gp0294640 | Ga0256351
Sample NameMetatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8h (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14604417
Sequencing Scaffolds19
Novel Protein Genes20
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
Not Available12
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001296Metagenome / Metatranscriptome728Y
F001583Metagenome / Metatranscriptome668Y
F001633Metagenome / Metatranscriptome660Y
F001758Metagenome / Metatranscriptome640Y
F004323Metagenome / Metatranscriptome443Y
F010923Metagenome / Metatranscriptome297Y
F014854Metagenome / Metatranscriptome259Y
F024104Metagenome / Metatranscriptome207Y
F034947Metagenome / Metatranscriptome173Y
F037756Metagenome / Metatranscriptome167Y
F049019Metagenome / Metatranscriptome147N
F051728Metagenome / Metatranscriptome143Y
F060937Metagenome / Metatranscriptome132Y
F076149Metagenome / Metatranscriptome118N
F079656Metagenome / Metatranscriptome115N
F089936Metagenome / Metatranscriptome108Y
F097458Metagenome / Metatranscriptome104Y
F099393Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256351_100874All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1355Open in IMG/M
Ga0256351_101900All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales998Open in IMG/M
Ga0256351_103127Not Available800Open in IMG/M
Ga0256351_103167Not Available796Open in IMG/M
Ga0256351_103319Not Available781Open in IMG/M
Ga0256351_103565Not Available758Open in IMG/M
Ga0256351_103631All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila753Open in IMG/M
Ga0256351_103865Not Available734Open in IMG/M
Ga0256351_103986Not Available725Open in IMG/M
Ga0256351_105167Not Available646Open in IMG/M
Ga0256351_105719All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus615Open in IMG/M
Ga0256351_105919All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia605Open in IMG/M
Ga0256351_106786Not Available571Open in IMG/M
Ga0256351_107078All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata560Open in IMG/M
Ga0256351_107237All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus554Open in IMG/M
Ga0256351_108124Not Available526Open in IMG/M
Ga0256351_108417Not Available518Open in IMG/M
Ga0256351_108664Not Available511Open in IMG/M
Ga0256351_108833Not Available507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256351_100874Ga0256351_1008741F049019MRTSRKLTHVLFAVFTLAIMSMAALAADPGTSLPASSQASDQKQGSLLIYSHYGSVTSNVSANDTRINITNTHVTSSVVVHFFFVSQACNVADFKTELTQSQTYSFLVSDFDPDTVGYIMAVAEAEDGLPIAMNFLIGDLFVKSSTGPFSANLGAIAFAALWDGTNNGNNPNESGFWRIPGGDATTPSVNITFGSAGNYNALPRTLAVDNIPSFAGGDRALLILLTPVQSFVTGGGAVGTLFGLLFDDAEQSQSFQISGGSCQSTNIISDSYPRTAPRFTTVVPAGRTGWMKVYKTSDLGILGSVIVYNIGGRDVNFHGGHNLHHLTLSGTQTATLPVFPFELQ
Ga0256351_101900Ga0256351_1019001F079656NNWPTATEWNSVLRKDYVDYHRVSQTDVPTAFSYDASLTGIDTVGTGNNAVYYLNGNVLLYNDSTDTDNDNYQITVKGANFQSLLTSAGASAEVSAQLWLENNSLDLSIASHDFDVVDDNTITFKISYDDIDPLTDCTSGIVRPTLALGTATGGFHMTGLHFFFDIIE
Ga0256351_103127Ga0256351_1031271F097458ELNHTLHRSYKLPPISLSLTFAALLPRRGIFALADILKLIFQYRIPIDSRYELLGSPILFDTRTLEVRRQKTNN
Ga0256351_103167Ga0256351_1031671F037756GVRQALFPVPTFGAHLAAAAGFPTPFSAANGVYGLVAGPSNLLQG
Ga0256351_103319Ga0256351_1033191F034947LLLCISTGRATLAEAINRLPPPEENHRKVDKRSARTGENTQTRQVA
Ga0256351_103565Ga0256351_1035651F076149MNKLLLTTLGMVAAVSAAYAQGTFNANNNYTPAGASAKAFVLDLNGNPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYADATSRGSVNVVISSLGGGTTPPATFGNNSDFKGL
Ga0256351_103631Ga0256351_1036311F004323MPLAGLRRLEGRATPAVADLSPVTRDYPSRALSDVFQAAA
Ga0256351_103865Ga0256351_1038651F089936HNRKAYFMKKALIGMAVGAMALGASVVPASAGYFDETETLWDGIAGTDGGSTDVAQSPASALCNDGQDDIFEAMVLTGGWAERLDTDGNGKPRYTVFQPYDVILNGLLGALGLEISDLNSQPAVVQGVLADHIANGSFDENELEDADLTRITMRSGFVATLSNSEYDIPGALLAGTFGERSIYDNVYIEGSKIQDGDQYSNGWLYCIAGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLPDTL
Ga0256351_103986Ga0256351_1039861F089936MKKALIGMAVGAMALGASVVPASAGYLGSSDDLTLWDGIAGTDGGSTDAPQGPEALCNDGQDDIFEALVLTGGWASRLDTDGNGKPRYTVFQPYDLILNGLLGALGLEISDLNSQPAVVQGILADHIANGSFDENELEDTDLTRITMRSGFVATLTESEYDVMFPPAATFGERDMYENVYIEGVKIEDGGQYANGWLYCIGGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLPD
Ga0256351_105167Ga0256351_1051671F099393MLVERGMPMRRFFPHCETQAPDSACGQVTRSGLVASRVRKVVFFSVCLPALLIALGAGDSLNLAYGQSESNAAVPTAVRATESGLSDQNRPTRDRSEPTVTGAAMHVALFVPRN
Ga0256351_105719Ga0256351_1057191F051728AKLLNCLSRIPTRRMKDASQRILGGGNKIKGCLQNLVNGLKNIPKNALKTWRNYVQAVKDKKLYDGARSAKLLNSLERIQRRTLKESHERIRGLIFASPAVKAVIKRMDGLLKRKPKQAFDKWRKYVQAVNNNELLDGVRSQKLLVVLSRVPVRRLKDVSERILGDGSKVKGAIKKIYATLQRMPKTAIEKWKKYLQGLKDKSFF
Ga0256351_105919Ga0256351_1059192F001633GGTRLGALAFAGGVLPDATLRGMRMSRSHGGTVSTVTGRDLSSEASSPGSDAPCRERRAGRGADTPAIFIVSRRHPYHEDGSGF
Ga0256351_106786Ga0256351_1067861F024104VPGPPFGSTTANSVAPVAAASLPGARCTSTIRPGLPLLLSPLPSGTFTSLGIKAFNNARCLPVHLANPPDSLSLPAARPNKSWDCGSSFQGRYVSAGLLFLK
Ga0256351_107078Ga0256351_1070781F001583RLMVLHYFTPXYYLYLVKLHILFCHESXDTDSGENILEDKSGTYVSXFYDAMLKEFQDAXYXTLLVFSYFIEHHFNPSTVNYFFFERXNISELEEIRFYGVAPHXYFRPLMGLLVVSPSHYEGLMXLALXFVLLAILPMTYNFYNSNNSYLPIVPMQSSKLQTICFMLFMFSVYCASSMLPCGRYY
Ga0256351_107237Ga0256351_1072371F051728KSQKLKALLDKAVRRTLRDATERILGDGSKVKGAIKKIYSAMQKMPKVALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPTRRTKDATQRILGGGSKIKGAMQSLINGLKNIPKRSLKKWRDYVQAVKDKKLYDGARSAKLLVSLERLQRRTLKEAHERVKGLIFASPAVKAVIKRMDGLLK
Ga0256351_108124Ga0256351_1081241F060937NGREIERRIAGIIPGDWGTVEPGWLVQLLGSRIARFGEWRQNSPAPLAGVAARHNAIEELGGQER
Ga0256351_108417Ga0256351_1084171F010923SSQLLLERAAGSERKSGGFARWTGRQQRPLNALIPKDVRILEGSGDGRRGRPNQVEEGQRASGYDPAPTGAIRDAAEEPKGRTGTDIYLGGSEVAGWEL
Ga0256351_108417Ga0256351_1084172F001296MEAAERRQLLRESKKPLRATGSGQEAVRGEPGSIDPAAGENSHRGAERRNVRRSCLQCSMPCMPVESRAG
Ga0256351_108664Ga0256351_1086641F014854LRWTAVIERKALVVSKIIPGNWGKVEPGWLARPLLERIARFGGGGRIHQFLWSRSHAVSYAKRNLAARGDKKPLRVGSSSSGRFRAWANRSYPEGKWLLLCIGTGRVTLADSINRLKPPNESHRKVDKGSARTGKNTQTRQFV
Ga0256351_108833Ga0256351_1088331F001758VTGEKLDQAGWFNSSKAAPQGAGAEAGFTSSSGGVRAPSVNAKKELGSEERLETAPSWVK
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