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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028160 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296276 | Ga0256900 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0688-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 187176728 |
| Sequencing Scaffolds | 14 |
| Novel Protein Genes | 15 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 1 |
| All Organisms → cellular organisms → Eukaryota | 3 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Tardigrada → Eutardigrada → Parachela → Hypsibioidea → Hypsibiidae → Hypsibius → Hypsibius dujardini | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001291 | Metagenome / Metatranscriptome | 729 | Y |
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F009381 | Metagenome / Metatranscriptome | 318 | Y |
| F010442 | Metagenome / Metatranscriptome | 303 | Y |
| F015430 | Metagenome / Metatranscriptome | 254 | Y |
| F023018 | Metagenome / Metatranscriptome | 211 | Y |
| F046789 | Metagenome / Metatranscriptome | 150 | Y |
| F047414 | Metagenome / Metatranscriptome | 149 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F084943 | Metagenome / Metatranscriptome | 111 | N |
| F096377 | Metagenome / Metatranscriptome | 104 | Y |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256900_1034170 | Not Available | 1173 | Open in IMG/M |
| Ga0256900_1067164 | Not Available | 722 | Open in IMG/M |
| Ga0256900_1068180 | Not Available | 714 | Open in IMG/M |
| Ga0256900_1068553 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 711 | Open in IMG/M |
| Ga0256900_1078811 | Not Available | 642 | Open in IMG/M |
| Ga0256900_1079786 | All Organisms → cellular organisms → Eukaryota | 636 | Open in IMG/M |
| Ga0256900_1081977 | All Organisms → cellular organisms → Eukaryota | 624 | Open in IMG/M |
| Ga0256900_1082539 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Tardigrada → Eutardigrada → Parachela → Hypsibioidea → Hypsibiidae → Hypsibius → Hypsibius dujardini | 621 | Open in IMG/M |
| Ga0256900_1085760 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Tardigrada → Eutardigrada → Parachela → Hypsibioidea → Hypsibiidae → Hypsibius → Hypsibius dujardini | 604 | Open in IMG/M |
| Ga0256900_1088854 | Not Available | 589 | Open in IMG/M |
| Ga0256900_1090719 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans | 581 | Open in IMG/M |
| Ga0256900_1099367 | Not Available | 545 | Open in IMG/M |
| Ga0256900_1104020 | Not Available | 528 | Open in IMG/M |
| Ga0256900_1107760 | All Organisms → cellular organisms → Eukaryota | 514 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256900_1028216 | Ga0256900_10282161 | F023018 | MQIRSIVLCLMAASAALAFPNPQDSAPSGGCPGGYAEGAEIERGRLVYVCQGGKVVPKACIAEDLSKVAIGSNFDNKHYRRKCVASGDDLSFDATGCLKNGQEHKAGETFDDGSNFYTCKQNTPGTEPLLTVSNEGCVDSGKRVPKKEKVNKDDAVYQCQETVNDGSKLVQVGCVKDGKQYAAGDAFEVGKYWFNCTQTGREKVVAKPAGCVANGKRLNDGDRYFDAGVAYECNIDGDKTSVRVMGCVQDDGGSQVERRLGCTWVEGQEPFQYEWACQNDAATNSAKKVQVRCNYKIGGGVYNIEPGCYRAVDKDFAGCINDGGKLKLQSFQGQDAEKSAQGAGLHAC |
| Ga0256900_1034170 | Ga0256900_10341701 | F010442 | MMHSSFFASLLVAALASTIFADTTSSGNRQCPGGYDNGKQMNIGRYWYECRDGQVIPKGCLTPDDSRIDIDGTFDTNDYRMQCVMGQDGFLSLTYKACMHKGSEHDVGAQWDNGVAYFTCVKEGSNVRVITLGCVDQGKQMKLDDRVAKGDFIFQCKEATDGTPKMNKVGCMQEGRKYNIGETFEGPKWWYTCTDSGAKVVGCMYQGHRLVDGDHFTEGDMMYSCRVRADKTFFEPFACLQREENGASIERKVGCFWVEGQGSNAFEYTCKPDNNNLISKVQVKCVYRASQGNFKLEPGCVQQAGDIAVGCLQDSSSGKLTIQTYSPDQMGSLPGLHKC |
| Ga0256900_1067164 | Ga0256900_10671641 | F009381 | MKLILILAFAFTASAMPEDRFKRDIQGIRDSCPGRCVMQDKYREWFTQMLPKAREFGKQLAEGDSQPVVPTLHPEKWDQYCTEIEAIKTCIGNCNDPGDAEKKTKAEAVLNAGKDIVCDTEIKGKFPCLQEVAKVPSQACNDQCNQYKAPIMEAYNQYKQTGTRDWDRAKNAGKNVCLLINCRLKCRKADIETKCGADGYAAAKKLVKELAVLGQTTHAQFR |
| Ga0256900_1068180 | Ga0256900_10681801 | F001291 | MQALLFVLASVVASTLAAPAPACIPDQQKFYWKAPCDGQSFTNRISVSDVKATQGGKTVDEQGGMDISVNLDLVAQISDQYGEIQKPLVDIGILEYSKNLLGKCEWKKVPTLGILDNIDSCKIVKNCHLTGSPTSLDASVSIKDIAGPLYAGINTNTYYGLTMTFKDDKNPVMCVYSQDIVIKK |
| Ga0256900_1068553 | Ga0256900_10685531 | F098404 | SGGLLFQSSDFTHTAMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKNNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK |
| Ga0256900_1078811 | Ga0256900_10788111 | F071833 | IKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
| Ga0256900_1079786 | Ga0256900_10797861 | F096377 | DSKHATNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKSIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE |
| Ga0256900_1081977 | Ga0256900_10819771 | F005470 | SISTNMSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDGELNKE |
| Ga0256900_1082539 | Ga0256900_10825391 | F046789 | MATSTVILLALVMVGCSMAQDPSSILEWAKLLKTANDLGMSMLSDAKDMNIMSYPCHWTRKAGWYRWKLNYDGKIACSTIGQVYSHNHCQSKGCAWKEPFMLLIKDFIINNRAPKDGLVAAIQGSDLSAQEKQDLLKLAGAGR |
| Ga0256900_1085760 | Ga0256900_10857601 | F046789 | AELVFENFLVEDSRMATSTIILLSLLMVGCSTAQDPTSILDWAKLLKTANDLGMSLLSDAKDMTILSYPCHWTRKAGWYRWQLNYDGKIACSTIGQEYSHNHCKSKGCAWKEPFMLLIKDFIINNRAPKDGLVAAIQGSDLSPQEKQDLLNLAGAGR |
| Ga0256900_1088854 | Ga0256900_10888541 | F001291 | AAPTPTCVPPQTQFIWKVPCDGQSFTNRIAVTNVTGTQQGKPIDQLGGLDVSIPLDLVATINDQYGQISKPLIDVSIQEYSKSLFGSCQWKKMPTLGLLDNLDSCKMVPNCHLTGSPTSLPASIDIKSIAGPLYAGLNVNTYYGLSLTFKDDKTPVLCVYAQGLVLKK |
| Ga0256900_1090719 | Ga0256900_10907191 | F015430 | MFSALILAATLALALADTPCTPEQTKIYWKAPCDGQTFENKIVPLNVTVMQDGKLVDDRGGLDLEIAINIVSEIKNNYGQTTKPLVDLAIYEYSKPLFGGDCSWKALPTFGLLSNLDACTMIENCHMTGLPTTLKASVDVKTIAGPLLHLVTKDAYYGLTLTFKDDKTPTVCVYIQDRV |
| Ga0256900_1099367 | Ga0256900_10993671 | F084943 | MKFVLVLAALGFLAYADASCVAARGHVICPDKHQKHDGKIVTIRLVDGERELDEGYASKNGFFAVYGCTSGGRGGFEPQLHIISKCKGDLNSRIRYNLPRVTGQQAEYNISDLINLKGYHQREDTHSGQIHEPCVVN |
| Ga0256900_1104020 | Ga0256900_11040201 | F047414 | MLSPLFSSNTHNGGFFSGFTPRYFSNVPHMQDTNKTFGPDDFLLRPSPTHMDIDVNARFEKAVENMKMELRNNPTQHLGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF |
| Ga0256900_1107760 | Ga0256900_11077601 | F096377 | NNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |