 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028186 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296248 | Ga0256799 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0950-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 263625599 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Fusarium → Fusarium sambucinum species complex | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003289 | Metagenome / Metatranscriptome | 495 | Y |
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F028371 | Metagenome / Metatranscriptome | 191 | Y |
| F057456 | Metagenome / Metatranscriptome | 136 | N |
| F070742 | Metagenome / Metatranscriptome | 122 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F075510 | Metagenome / Metatranscriptome | 118 | N |
| F089626 | Metagenome / Metatranscriptome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256799_1006008 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 3366 | Open in IMG/M |
| Ga0256799_1080984 | Not Available | 839 | Open in IMG/M |
| Ga0256799_1082586 | Not Available | 829 | Open in IMG/M |
| Ga0256799_1090223 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Fusarium → Fusarium sambucinum species complex | 782 | Open in IMG/M |
| Ga0256799_1121333 | Not Available | 640 | Open in IMG/M |
| Ga0256799_1128111 | Not Available | 617 | Open in IMG/M |
| Ga0256799_1156082 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 537 | Open in IMG/M |
| Ga0256799_1162110 | All Organisms → cellular organisms → Eukaryota | 523 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256799_1006008 | Ga0256799_10060081 | F075510 | LLLILCILFFLFHGKVYXXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNEATYDGLEPEMSWXDEALSNELGTFIEALIVLNIICWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAWLIVCPHHKTGIFGLIFLFFSLFHQPTLHGVNESGFFYKRRLLFTINRVKQKNFYKQSHLNLEMNLFFQTTYALFIMCALYTNTFLPYGRFYNRLGGNIGMLSAYFYVFLYLGITSLRRPYWLELYFYFIYNRTNFLKKNLVFLPKINFYK |
| Ga0256799_1080984 | Ga0256799_10809841 | F028371 | VVVNESFLVSASDDGLDVSRLLDFRSTFDDLLLGEFNTVMLKVPLSERSSIDLDDTALGQSVGSDEFVVGGVVDDTDDLGLSGDLFRSPGEVSGVESEGLEFVVSSSNSVSSDGLFTDLGESGRTTRFVLLLLLVDGHTTTGKSSLVSRVSGDTHYV |
| Ga0256799_1082586 | Ga0256799_10825861 | F071833 | MNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
| Ga0256799_1090223 | Ga0256799_10902231 | F057456 | PVIPSVAFPIIQDLSLLYLVILCPAYETVRFVDNQTVRQDLAVELFR |
| Ga0256799_1121333 | Ga0256799_11213331 | F089626 | VVVDNLDVSTIVSDLAFFLKSGVISLAELGETILAGDDDLLSTGELEFTSSESFNSMGNVLFSKSDGVEDLVDLDSGDLTGGFTEGVSHTSLKSIGTSA |
| Ga0256799_1128111 | Ga0256799_11281111 | F003289 | GNIVTEVALQTNFGVGFNNTQSDVLIHLTQXQYWXXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISWCVNIITNSSFILRMIEXQAETGLLTIRIRGKQWYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQ |
| Ga0256799_1156082 | Ga0256799_11560821 | F070742 | SVPFFIHSEHHEPVKIRKIIKDKVGNPCWRTNLFFPQNLILSLGKTTNVTYIYFENFENGCELEISVSETETGPYIPAVRKKFFPRSSLRRVKVGSLPCKFLKIVVHKGVTINPKSIHLFGFYAEDTEDIFGDGLFEVLVTNSQRLIYQ |
| Ga0256799_1162110 | Ga0256799_11621101 | F005470 | CSLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |