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Sample 3300028239
3300028239: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 2, Chloramphenicol (External Submission)
Overview
Basic Information
IMG/M Taxon OID 3300028239 Open in IMG/M GOLD Reference Gs0118397 | Gp0242247 | Ga0302335 Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 2, Chloramphenicol (External Submission) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 206705614 Sequencing Scaffolds 6 Novel Protein Genes 6 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 1 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 2 Not Available 3
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4149 Long. (o ) -119.841 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F006329 Metagenome / Metatranscriptome 376 Y F046107 Metagenome / Metatranscriptome 151 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0302335_1016242 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 2829 Open in IMG/M Ga0302335_1033086 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 1272 Open in IMG/M Ga0302335_1035371 Not Available 1155 Open in IMG/M Ga0302335_1053640 Not Available 625 Open in IMG/M Ga0302335_1062619 Not Available 523 Open in IMG/M Ga0302335_1064059 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 511 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0302335_1016242 Ga0302335_10162421 F046107 MYFGKLYYAGIFLFLTNKKEIKSRCNIFKIDSVVSTKLSPDLSFIELLGRDSPFVEIDDDPVLSLCLISTTSMLLVKFGILQYLSNNSSNELLMI Ga0302335_1033086 Ga0302335_10330861 F046107 MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLFPDSSFIELLGRDSSFVEIDADPVLSLCLISTTSTLLDKFGILKYLSNNSSNELLMIGIALVKNSAKPT Ga0302335_1035371 Ga0302335_10353711 F006329 MKLELYLADVVDDHKIKMDAMRLKIRKIRKYAINKEAWYHYVVGSMVTLVAILIAFVVAFKCIK Ga0302335_1053640 Ga0302335_10536401 F006329 MKLELHVADVVDLHKIQMDAMRLKIRKIRKYAINKEAWYHYVVGSIFTLVAILIAFVVAFKCSR Ga0302335_1062619 Ga0302335_10626191 F046107 KEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDDPVLSLCLISKTSTLLDKFGILQYLSNNSSNESSYLIILIKRKFY Ga0302335_1064059 Ga0302335_10640592 F046107 PRSNIFKIDSVVSTKLSPDSSFIELQGRDSPFVEIDDDPVLSLCLISTTSTFLDKFGNLQYLSNNSSNELLMIGIA
