Sample 3300028252

Basic Information
IMG/M Taxon OID	3300028252 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0294649 \| Ga0256360
Sample Name	Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	93054822
Sequencing Scaffolds	28
Novel Protein Genes	28
Associated Families	23

Dataset Contents

Total Genome Size

93054822

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → river → river water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Louisiana
Coordinates	Lat. (^o)	29.8571	Long. (^o)	-89.9778	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

USA: Louisiana

Coordinates

Lat. (^o)

29.8571

Long. (^o)

-89.9778

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004916	Metagenome / Metatranscriptome	418	Y
F007472	Metagenome / Metatranscriptome	350	N
F009078	Metagenome / Metatranscriptome	323	Y
F016245	Metagenome / Metatranscriptome	248	N
F023359	Metagenome / Metatranscriptome	210	N
F023494	Metagenome / Metatranscriptome	210	Y
F029603	Metagenome / Metatranscriptome	188	N
F042749	Metagenome / Metatranscriptome	157	N
F044315	Metagenome / Metatranscriptome	154	N
F051950	Metagenome / Metatranscriptome	143	Y
F054804	Metagenome / Metatranscriptome	139	N
F059663	Metatranscriptome	133	N
F059886	Metagenome / Metatranscriptome	133	Y
F070194	Metagenome / Metatranscriptome	123	N
F076149	Metagenome / Metatranscriptome	118	N
F078620	Metagenome / Metatranscriptome	116	N
F082152	Metagenome / Metatranscriptome	113	Y
F082153	Metagenome / Metatranscriptome	113	Y
F084131	Metagenome / Metatranscriptome	112	N
F089936	Metagenome / Metatranscriptome	108	Y
F095362	Metagenome / Metatranscriptome	105	Y
F099393	Metagenome / Metatranscriptome	103	N
F101271	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256360_1003316	Not Available	2151	Open in IMG/M
Ga0256360_1014685	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1066	Open in IMG/M
Ga0256360_1019226	All Organisms → cellular organisms → Eukaryota	923	Open in IMG/M
Ga0256360_1019939	All Organisms → cellular organisms → Eukaryota	907	Open in IMG/M
Ga0256360_1020697	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	890	Open in IMG/M
Ga0256360_1021284	Not Available	876	Open in IMG/M
Ga0256360_1021772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	866	Open in IMG/M
Ga0256360_1024369	Not Available	815	Open in IMG/M
Ga0256360_1027364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766	Open in IMG/M
Ga0256360_1029162	Not Available	741	Open in IMG/M
Ga0256360_1031156	Not Available	716	Open in IMG/M
Ga0256360_1032233	Not Available	703	Open in IMG/M
Ga0256360_1035836	Not Available	663	Open in IMG/M
Ga0256360_1036179	Not Available	659	Open in IMG/M
Ga0256360_1037196	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	650	Open in IMG/M
Ga0256360_1039334	Not Available	630	Open in IMG/M
Ga0256360_1042190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	606	Open in IMG/M
Ga0256360_1045365	Not Available	583	Open in IMG/M
Ga0256360_1046233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	577	Open in IMG/M
Ga0256360_1053685	Not Available	534	Open in IMG/M
Ga0256360_1054702	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	529	Open in IMG/M
Ga0256360_1054951	Not Available	528	Open in IMG/M
Ga0256360_1055044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
Ga0256360_1055368	Not Available	525	Open in IMG/M
Ga0256360_1055411	Not Available	525	Open in IMG/M
Ga0256360_1055449	Not Available	525	Open in IMG/M
Ga0256360_1058329	Not Available	512	Open in IMG/M
Ga0256360_1060425	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256360_1003316	Ga0256360_10033161	F084131	QPEQAAQPAPAQPLPSNVPLAQIEDFQSLQTLRDQAKEAKRFAQEQLDRDDFEPVRVGDTVLGRPELKAILRNAEKTLDDDIPARAQFLTQKQEAQKLAHQMFPYLKNKETPEYVLAQQALSQMPWMRNLPNADWIIGVQIEGLKALEAKQKAKPESKPKPAMSSKPPASQSVVSSAGGDVRAPSATKAANQIEALRMQLSKKGGVTANEAAAFLLAREKAKLNR
Ga0256360_1014685	Ga0256360_10146853	F004916	FFKMKLTWILFALMALSSLALVFATEVQEDCHPTCRWQCDDPICPAQCHPVCERPKCQVHCEETPCAQCKVHCDKPQCNVRCPKDLCEKSDCPKCETVCAPAQCRTSCVAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCETPKCAAKPPAAPAAANTTCCACNQANLKASLIQAGEAKGVAPSFLELMNEVKFQEQQGQTPCCACNKQ
Ga0256360_1019226	Ga0256360_10192261	F007472	TYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRVTASDSSLASSLYNYTQTNFDMFGQTLNVQSANTKIVRTSQQTYAQLGASGVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLIVVSAEIIAFLAFLGLSDKIATDSPNCLSGPCQKFADTVTTQLGQNVITINSEAAVPVSLQSVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256360_1019939	Ga0256360_10199391	F007472	LAVGIQLGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKIEFSYTRVAASDTSLASTLYNYTQTTFDMFGQTVNVQVANTKIVRTSQQTYAQLGASGVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLSGPCQKFADTVTTQLGQNTLNVAGADVAVSLQQVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256360_1020697	Ga0256360_10206972	F042749	HTSITVAASQIPLTMAGSTWMKILAVPCILLVAMAAVMTFMPSDSSVQPTTAVALVQSSQHTQSLALFKHAAIEDVYVYAGKEEHTRHLVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISSKGFTDMRAYVAAGNNLVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGAFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0256360_1021284	Ga0256360_10212841	F009078	MVHVNKPAQVREDPITHKTGGCNNDAGSIGKSFCLQARKGNRSRRKVTGGADFYTKPAQLIGMRKGSVFVRGVAPKGSYAV
Ga0256360_1021772	Ga0256360_10217722	F023494	MKGNTALNRAFLSFPELNRLVTPTNFIDKKSHVREQILIRQFKTNQLS
Ga0256360_1024369	Ga0256360_10243691	F076149	MNKLLLTTLGMVAAVSAAYAQGTFNANNNYTPAGASAKAFVLDLNGNPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYADATSRGSVNVVISSLGGGTTPPATFGNNSDFKGLKLEGGGVIPEPSTVALAALGVA
Ga0256360_1027364	Ga0256360_10273641	F023494	MKGNTALNRAFISFPQLNRLVTTTNFIDKKSHLREQILISQFKPNQLSKVNTKELG
Ga0256360_1029162	Ga0256360_10291621	F099393	ERETLMLVERGMPMRRFFPHGETQAPDSACGQVTRSGLVASRVRKVVFFSVCLPALLIALGAGDSLNLAYGQSESNAAVPTAVRATESGLSDQNRPTRDRSEPTVTGAAMHVALFVPRN
Ga0256360_1031156	Ga0256360_10311561	F089936	KAYFMKKALIGMAVGAMALGASVVPASAGYLGSSDDLTLWDGIAGTDGGSTDAPQGPEALCNDGQDDIFEALVLTGGWASRLDTDGNGKPRYTVFQPYDLILNGLLGAPGLEISDLNSQPAVVQGILADHIANGSFDENELEDTDLTRITMRSGFVATLTESEYDVMFPPAATFGERDMYENVYIEGVKIEDGDQYANGWLYCIGGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLPD
Ga0256360_1032233	Ga0256360_10322331	F044315	GCLAKISKKINALSADQQHMAQQFESELTQLQQSVSNLKAEITHVNPRSGLVRVIKNDAIKTAFPAGASEAAIAVSTQSAHDPEFDESGFKKGANRARNMRDKKYGAFPNRWVDKDTVEAFADHIYGPNPTTLDRKGVEREGYFTMAKIHSGMFYYINLEGVSNHHIKLIMQGTDGYNREYEGYGSIYTGPIYDGDHGVRDYFEVQDLVSGDVEFFRFSHPWTPPAMK
Ga0256360_1035836	Ga0256360_10358361	F070194	LFVVFDTETSCQAFPVYDMAWRIVDRQGREYNRGSYFMPDIIERITPIFRKHEEYPEYVAKGHVEQRFYQDVKDTFNRQVKTLREKGHRILLVAYNADFDRKALKRTAELMGGSRRSRFFRFEPEWVDLWQYWAESAPLHYTSERLTENGNWKSSLEEVFRFENHNPEGYAEKHTAWSDTDDAISVLEKVIRRKKRLPVYKGDAWMPGGWRALQKRCPGP
Ga0256360_1036179	Ga0256360_10361791	F078620	GPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEAGGSVAPVALVALVAFCIWVEHTNLMDADPGAGLVLLHTLLG
Ga0256360_1037196	Ga0256360_10371961	F059663	AITALLLSGILSIYFVLVFFAGFRAKIVYSWGATGARRIAMLTSLFVVISVVIAFLATTGITQALKTDNPVCTDGPCNKFVDSQTASLGTYTHLGVTYNMNQNMTWGPAAGWFLFLACIPLSLLLVIVAGLNNYPVPIDSIGSGEAL
Ga0256360_1039334	Ga0256360_10393342	F054804	ACTKTWCLNYGPAVLAHSTSRTAMKIIITTQVYCNYGTANDSYWKAKGAGDYVVKLPCDYTEEDVKRKIELAKAVIELHNTPMWWETWLGYHVVEDNILTDFESQQLEWDGRIDFPAEVLNV
Ga0256360_1042190	Ga0256360_10421902	F101271	AHQREALAKRDWVKLQRSIQALQHAMHQIASFPGGAEGVRHQLVASEGEAREAADRLIEKVAIERRSSAELIRLQLQRLQALQAMTSLDDDAGTYTESGATKGRSGRLSTWV
Ga0256360_1045365	Ga0256360_10453651	F051950	SYQLNFNVGFSTTRSDVLVHLAQXQYXXXFXFAFLXSFYYLVASRVVRYRSLKMRPKMSTSFRPHGKXGDFLAAVIPAIXCLNILTNSNFILRLIEXQSESSLFTIRVRARQXYXIYKFELKNFTDILTVPKNVGYNRXCVNTFGDLQVAEDYLYVLQLRSQNKXVKNYXTEVLQKTGGIKKNHIVAPQEQLR
Ga0256360_1046233	Ga0256360_10462331	F101271	SEAIALQREALAGRDWAKLQQSIHALQQAMQHISSFPGGAEGVRKQLLASEGAARETADHLIERVMIERRSSAELIRLQLQRLQALQTMTSFEEDTGLYSETGATKGRGGRLSTWV
Ga0256360_1053685	Ga0256360_10536852	F082153	MVTPVELPAVAAPMVSPLTVTVTALLAATLPPSIEMMIWVLLGVPALPAGGPLPLTCTPGVPVLEKNPEGYVSVMLLPLPSAPPALVVNENVAAAPDFPATRSEGAIEN
Ga0256360_1054702	Ga0256360_10547021	F023359	TLRQSIFESYSTYDSNSGGMVKGYFKTSQAFVVIVLVVSFVLTVLLTLFQLDRVRNWFIFSIGMSFTRIAITILAGLVLLSAVIAFLSFLGLPSAFKEEIPNCVDGPCREFSNSLKSPDLIEVQNGVAYSLVNTRSWGPVEGWFIVLGIIPVSVVLLALIVLNKFPLPIDSEASSG
Ga0256360_1054951	Ga0256360_10549512	F095362	VNIPVQAKFIEWFYNKSFPSYDSKRNRNGFLNDMLDLNKIDHDALQYWIQK
Ga0256360_1055044	Ga0256360_10550441	F029603	VVYTSTLGLISREKSSKTFVPVDRGGKYAFIPIKASGYPQNLPKGPKCPKRYPQFSKSVGQQIPLPPALVAPNRSYAITSRPDQSQQLKL
Ga0256360_1055368	Ga0256360_10553681	F082152	GVPVLEKKPAGYVSVILLPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0256360_1055411	Ga0256360_10554111	F016245	SAGLVLTLQLSGGTFSAGQAVEFVFGGVTNPISNQSHISNIHAATLNAPGNIVGASVTGYLPAIVNGLGALVVGLSNTVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGAGFACSASTTVTFVSPADGSGYVSISAGLVLTLQLSGGTFSAGQAVEFVFGGVTNPISNQSHISN
Ga0256360_1055449	Ga0256360_10554491	F082153	MPVELPAVAAPMVRPVTVTVTAVLAAIDWAAMVMTIWVLVGVATVPVGGPPPLICTPGVPVLEKKLGGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVTWPPIT
Ga0256360_1058329	Ga0256360_10583291	F059886	VIYASRAAFATLRGGRHQLSPTIPRSPGIIPAVLSVAPFRPLRFD
Ga0256360_1060425	Ga0256360_10604252	F054804	MKIIITTQVYCNYGTANDPYWKAKGAGDYVVQLPCNYTDEDVKRKVELAKAVIELHNTPMWWETWLGYHVVEDNILTDFESQQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028252: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences