NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028409

3300028409: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #190 (v2)



Overview

Basic Information
IMG/M Taxon OID3300028409 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0154663 | Ga0306889
Sample NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #190 (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55617317
Sequencing Scaffolds24
Novel Protein Genes25
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available21
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC361

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002411Metagenome561Y
F006455Metagenome373Y
F007732Metagenome346Y
F007954Metagenome342Y
F014215Metagenome265Y
F027372Metagenome195Y
F030941Metagenome184Y
F030943Metagenome184Y
F032101Metagenome181Y
F038482Metagenome166Y
F044223Metagenome155N
F063209Metagenome130N
F066289Metagenome127Y
F072828Metagenome121Y
F078014Metagenome117N
F079392Metagenome116N
F084902Metagenome112Y
F086358Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0306889_102988Not Available2094Open in IMG/M
Ga0306889_108486Not Available896Open in IMG/M
Ga0306889_110543Not Available763Open in IMG/M
Ga0306889_111329Not Available723Open in IMG/M
Ga0306889_111531All Organisms → cellular organisms → Bacteria713Open in IMG/M
Ga0306889_112049Not Available690Open in IMG/M
Ga0306889_112394Not Available675Open in IMG/M
Ga0306889_112726All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis663Open in IMG/M
Ga0306889_113120Not Available649Open in IMG/M
Ga0306889_113285Not Available643Open in IMG/M
Ga0306889_114053Not Available619Open in IMG/M
Ga0306889_114356Not Available610Open in IMG/M
Ga0306889_114697Not Available599Open in IMG/M
Ga0306889_115080Not Available590Open in IMG/M
Ga0306889_116523Not Available551Open in IMG/M
Ga0306889_116813Not Available544Open in IMG/M
Ga0306889_117232Not Available534Open in IMG/M
Ga0306889_117329Not Available532Open in IMG/M
Ga0306889_117423Not Available530Open in IMG/M
Ga0306889_117859Not Available521Open in IMG/M
Ga0306889_117932Not Available519Open in IMG/M
Ga0306889_118191Not Available514Open in IMG/M
Ga0306889_118392Not Available510Open in IMG/M
Ga0306889_118834All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0306889_102988Ga0306889_1029885F063209MSEAQLLKEIKQLKINQKNMEKKLDKAIGNANGQPDAEDHIEVWNDEQDLPGDIRIGKVIKEAKTGRRGVRCIQVGKVEQILGRKRTRTLEIMRELDRKHENLRYENRGGNKGSYLYYTG
Ga0306889_108486Ga0306889_1084861F007954MNNQIEATEEIEQFVTKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATSEPSEPTPETIRDAWTEIATSGGLDGWRKFQSMASEYGLHRMKRPAMIDKLTDMGVMPGDDPPEDTHEQTVFNAPRTGGMTSSKAFAVAED
Ga0306889_110543Ga0306889_1105432F079392MTQATPVWEYIATKHERNVTWAASALGVDRSTLHRVMNSGYVINGNLYTIKRKAK
Ga0306889_111329Ga0306889_1113291F014215SIQHINAGTNRDDDPCLNIEVVGGNESDDDDTPTVNGVELDSVADVANALSHLDDPSNEGHIAVRSSEELVIIQSRGSHFGHMGELLEAQKQGHISIQPITAGTNRSGDPCLNIDFVGGDDDDTPTVNGVELDSVAGVANALSHLDDPSNAGHIAVRNSEDLVIIHSRGSYFDHMEALLEAQKQGHISIQSIAVGTNHDSDSCLSIEVVGVDE
Ga0306889_111531Ga0306889_1115311F030941PAAIGLLFIFHVFVRSKNPPADTSNRINHFRLVWFALTREGLFVGLFPWLKNDEYDNVTK
Ga0306889_112049Ga0306889_1120492F072828MKVNPTQMTTLTEFLATADTDNTVALAAARAFSEQVLKPFDDRMMNERTVMGLIGMQSGETFMQSLEAAPDSVMPARVKAWFKPSEAGIDVATPSAVDIIEAMAGAGAITEAESGVLKGYAYDTVTPFSRITLHDVLLT
Ga0306889_112394Ga0306889_1123941F027372MIEVIASSTEALYDDYANLKLQTSSGYAPYGLAGIVVNDCVAVICGNCATDEELADNDDGSIFANSEWDYPAPACEDCQKPLNVNLIVHKSHDPELHFRLRMTEELGGFADRDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVNDIAPQLQQLAGHAPYDTTPTDIGYE
Ga0306889_112726Ga0306889_1127261F002411MVIRSLLPISLETMHDPKEPVLLIALKIMRHAKLCLSVIIFLICVCWHPERMCR
Ga0306889_113120Ga0306889_1131201F086358AFDWLDREIIQRQFDIVQERTYDHPSHYAREIVLKQIVTREYEDDNYDSRLRLWDELISFTRYNVEVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLRRTNNAEVDPNPDKQGENRLDVLDMTITPELRYTNLGPLIDTEWFVYNS
Ga0306889_113285Ga0306889_1132851F014215RVETTMTDKNADNDSTEMTDNDSTPTVNGSELDSVVGVANAFSYLDDPSNAGYISVRNLEDLVIIWSRETHFGHMYSLLEAQKQGHISIQSITAGTNPRGDPCLKIEVVGGNESDDDDTPTVKDVELDSVVGVANAFSYLDKMYNAGHITVRSSEDLAIIQSRRTHFRYMGELLEAQKQGHISIQHISTGTNRVNDPCLNIEFVGGDE
Ga0306889_113904Ga0306889_1139041F044223RKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHISLEGWTRFGRFKGDIAQSTGYGKDALFGELKSLRRNGFVSIRVLNPTDENPHSEIKVKPPAADPEQWTHHETDDRPDLFGHGVPDDNETNAAKHHLLFAIEDGDEELIGGCDLQEFGLKRVEDEHDDRLVAPIDEPNHEIEDEVDRISHGKS
Ga0306889_114053Ga0306889_1140532F078014MKCVVMWLNMCCFIIERHQIRVWAVKVGFDPRQIAHTVTYMDISTSSCSLKYQLSFKARM
Ga0306889_114356Ga0306889_1143562F038482MSEKLTKADELCKELAETLSQNPGTVKTTIEIPHPTLGTTIVTDDKISKMAAGELFELDRGVQARIEQDE
Ga0306889_114697Ga0306889_1146971F007732MNEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIVVNDCNIVCGNCATDEELADNNNDAIFGNTEWDYPAPVCEDCQKPLNVDLLLYKSHDPELLFRLRMTEELGGFADIDCFTIEEIGAKAAERAAKIGRDYAPTDMFESDEHYEIPTDSAQYANNIA
Ga0306889_115080Ga0306889_1150802F006455MNQDVKPPAGWTEIEPEFEYQRQTFQRRRDGLVVAIEREWMSSYNVVTLPENYYQDNQVIDCIEAGVEPEDAAEPAREWMEQNNRQ
Ga0306889_116523Ga0306889_1165231F007954MTNQTQAGEIEQFVTKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATVEASSEPSEPTPETIREAWTKIATDEWRKFQGMAAEYGLYRMKRPAMIDTLTDMGVMPGDNPWDTEQTVFDVPRTNSMVSSKAIAV
Ga0306889_116813Ga0306889_1168131F032101VLVLPRLSRSTPPRLVVLNIATLKSIRPIVPFAMSNQNGTDEIEPLVNEAANPETALCVNFNIVGDLLIGELDSWHVGICKIEKDDDDLLVYGENGHLVERIDTDVWTTSTLFDGIEAKDLAKIADTINGAIASEYDEL
Ga0306889_117232Ga0306889_1172321F044223RKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHISLEGWTRFGRFKGGIAQSTGYPKDALFGELKSLRRNGFCTIRVLNPTDESPHYEIKLKPPAADPEQWTHHETDDRPDLFGHGVPDDNETDSQKHHLLFAIEDGDEDLIDEFDLEELGLKRVE
Ga0306889_117329Ga0306889_1173291F007732MSDEIILSSTEALYDDYADLKLQRSSGYAPCGLAGIMVNDCDIICGNCATDEELADYDNGSIFANSEWDYPAPLCEDCQKPLNVDLFVHKSHDPELHFRLRMTEVLGGFADTDCFTIEEIGEKAAKRAAKIGRDYA
Ga0306889_117423Ga0306889_1174232F084902DSAQYANNIAPQLRQLAGYEDGTGKGTYNITPTDIVYDIHREDVLPAFQEAYHTEAVKRE
Ga0306889_117859Ga0306889_1178591F032101ATLKPSQPVALIAMSDQIEADEIAQFANEAANPETALCVNSAIVGDLLIGELDSWQLGICAVKTDGYNLLVCDENGQVVDRVDTDVWTTSTLAYDAEVKDLATIADMVNSAIASEYGDL
Ga0306889_117932Ga0306889_1179321F007732MDEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIIVNDCNIVCGNCATDEELADNNNDAIFGSAEWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYATDMFAS
Ga0306889_118191Ga0306889_1181911F030943MSKEIEADEIEQLVTEAVNVEAIPSVTSGIVGDLLNGELDSWRVVICEVVKDDDDLLVCGEGGQVVERVDTDVWTTSALSGTEVKDLSKIADTINSAIAAEYGAL
Ga0306889_118392Ga0306889_1183921F066289MNEIIVSSTEALYDNYADLKSQTSSGYSTYGLAGIVVNDCDIICGNCATDEELADNDNDAIFGNSEWDYPAPVCEDCQKPLNVNLIVHKSHD
Ga0306889_118834Ga0306889_1188341F007732SGCNLPDGSCAKTPERRDIRPGNQIMSDEIIVSSTEALYDDYANPKSQTPSGYAPYGLAGIVVNDCDIICGDCATDEELVDNDNDAIFGSAEWDYPAPVCEDCQKPLNVDLPVYKSHDPELLFRLRMTEELGDFADTDCLTIEEIGAKAAERAATIVWLRGWGG

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