Basic Information | |
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IMG/M Taxon OID | 3300028481 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0272169 | Ga0233366 |
Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C4 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 252128370 |
Sequencing Scaffolds | 14 |
Novel Protein Genes | 14 |
Associated Families | 11 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 3 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → Viruses → Predicted Viral | 4 |
Not Available | 5 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
Type | Host-Associated |
Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | USA: California | |||||||
Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039427 | Metagenome / Metatranscriptome | 163 | Y |
F041521 | Metagenome | 159 | Y |
F042680 | Metagenome / Metatranscriptome | 157 | Y |
F051611 | Metagenome | 143 | Y |
F057003 | Metagenome / Metatranscriptome | 137 | Y |
F058575 | Metagenome / Metatranscriptome | 134 | Y |
F063246 | Metagenome / Metatranscriptome | 129 | Y |
F066313 | Metagenome | 126 | Y |
F072921 | Metagenome / Metatranscriptome | 120 | Y |
F082887 | Metagenome / Metatranscriptome | 113 | Y |
F104183 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0233366_1000108 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 37008 | Open in IMG/M |
Ga0233366_1003346 | All Organisms → cellular organisms → Bacteria | 4855 | Open in IMG/M |
Ga0233366_1003434 | All Organisms → Viruses → Predicted Viral | 4778 | Open in IMG/M |
Ga0233366_1005119 | All Organisms → Viruses → Predicted Viral | 3928 | Open in IMG/M |
Ga0233366_1010109 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 2765 | Open in IMG/M |
Ga0233366_1018608 | All Organisms → Viruses → Predicted Viral | 1940 | Open in IMG/M |
Ga0233366_1031988 | All Organisms → Viruses → Predicted Viral | 1376 | Open in IMG/M |
Ga0233366_1036135 | Not Available | 1271 | Open in IMG/M |
Ga0233366_1045964 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 1079 | Open in IMG/M |
Ga0233366_1048581 | Not Available | 1039 | Open in IMG/M |
Ga0233366_1070506 | Not Available | 798 | Open in IMG/M |
Ga0233366_1098129 | Not Available | 631 | Open in IMG/M |
Ga0233366_1106433 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 595 | Open in IMG/M |
Ga0233366_1106575 | Not Available | 594 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0233366_1000108 | Ga0233366_100010833 | F057003 | MANFINVSGITYCGKEAQEIFSKDIYDIDLRQYGITFMDGVKGKMKMYSGEIGDAWQLYTCPFTPQGEASLAEAYIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGEWYFGKLRQKMSKEYQEIFWGGDTARTATTKTYLKAVDGIEKQLNDNTGVTKVSGASFTVDNAIAQVEALIMKGLEVAGDAEVDTEGYKIFMNHQDARVLEIALGKLCCDVQNNRIFGNYGRENGRIFIMGYEIVPSMISKGKMIFGPARNLVLGYDTFDSHLEYKLIDMRETTGDNMFRVLAISNIAVGIIMPELFVYSA |
Ga0233366_1003346 | Ga0233366_10033461 | F041521 | EYRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR |
Ga0233366_1003434 | Ga0233366_10034342 | F057003 | MSNFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGISFWDNVKGKMKLYSGEIGDAWQVYTCPFTPAGAASLAESFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMSKEYQEIFWGGDTARTATTKVYLKAADGVEKQLHENTGVTKVTASAFTVDNAIAQVEAIIMKGLEVANNAEVDTEGYKLFMNHNDLRVLEVALGKVCCPNSTNQVFANWGRENGRIYVMGFEIVPSMISKGKMIFGPARNLVLGYDTFDSHLEYKLINLRDTTGDNMFRVIAISNIAVGIILPELFVLAE |
Ga0233366_1005119 | Ga0233366_10051191 | F039427 | LLIYKGMSKKTFNLVTGIIGGLQTIGVAIVTYTNPEYATAINSAIVIAGAAAIEICNLFTPSEK |
Ga0233366_1010109 | Ga0233366_10101092 | F057003 | MANFINVSGLTYCGKEAQEIFSKDIYDIDLRQYGITFMDGVKGKMKMYTGEIGDAWQLYTCPFTPAGSASLAEAFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWKGDTGYTGTSKVYLKAVDGIEKKLGAIPSDNQLTISAITVGNVVAQVESAIDKALEVAGNAEVDTEGYKIFMNHQDVRVLEVALGKLCCDVQTNRVFSNYARENGRIFIMGFEVVPTMQSKNTIIVGPARNLVLGYDTFDSHIEYKLIDMRDTTGDNMFRVLAISNIAVGIILPELFVFGKTA |
Ga0233366_1018608 | Ga0233366_10186082 | F104183 | MKKEDFEIQAKDAAKAMNKKKAPSRPETQFIKGALWAWDILSQGHTIEEYEDILRRDVCDRFQIVHPEQWQELLISETATMMADRDGMQADIMTEGRLLEKWDKNRMPYKESNPLYVHLKELQRSIGMQREHLGLSAKSTKKMESPKRGADEKDKLLDTLSEITNV |
Ga0233366_1031988 | Ga0233366_10319882 | F066313 | MKEKFQKWMRRNNMMFSAMAGETFTNAEVVYTHIGLVAFLIVLGLAG |
Ga0233366_1036135 | Ga0233366_10361352 | F058575 | MINQIMGHFFEGKSASELYEAGNEYRKNRCFGEAINFYRAAAEAPDATDEIKRKSLASVELMQEINGFVNTDLMNP |
Ga0233366_1045964 | Ga0233366_10459641 | F057003 | MANFINVENITYNGKEAQEIFSKDIYDIDLRQYGITYMDGVKGKTKLYSGEIGDAWQVYTCPFTPAGSVALAESYIEPSAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFAEWYFGKLRAKMAKEYQELFWQGDTAHTATTKTYLKAVDGVEKKLNAGVPAGNKVTLSAFTVANAVEQVEAVILKGLEVANANEVDTEGYKVFMNHADVRVLEIALGKLCCGNSINDRFANYGRENGRIFVMGYEIVPTMQSKNSVIFGPARNL |
Ga0233366_1048581 | Ga0233366_10485812 | F082887 | MNKEKIKKIAKYTTNILGIISMLIAGINAVDGITIPYAIQIVHVIAVIQGAIGTYLLSGKALESRKEEKENVKD |
Ga0233366_1070506 | Ga0233366_10705062 | F072921 | MTLSTDRKSASEGEYLDIRWECNACPDSLYLSVDSGYQQYSIAVADNGSTRLAMGRSKGKTTISLIGVISGKKVTESVEIRIRNRKESRKTKAPLSVRMKAFGEKMQAKWYVFRAQCKYWWLSQKKWQKALWIALLVLWLGMLIASFGNKPEPKASSDQVQTAYLMR |
Ga0233366_1098129 | Ga0233366_10981291 | F051611 | VGDQKVFTLPNYGKARSAQSYANQLKKATMGTENPMEFKAVVGDPIPGSGQCSVTITRMS |
Ga0233366_1106433 | Ga0233366_11064332 | F063246 | MGKLKIELNDIQNIRDLLQETYRLADEQIVQSQNEINKLANATSLQEEPMESKAKYAKAINDYLGLKDKAIAKKLDIAKLLTDIYHHNGDVKGALEHGEAAKNMSFNFDDIRKIVDDSLNEQEKTKTIQLNKK |
Ga0233366_1106575 | Ga0233366_11065753 | F042680 | MTVNDIKPLVKGIAQLQSVLAGGIAVYKIVAVDGTEYQLEIDVSNKADVGASATFNATEKALLLMRWIRKANEDDTLIKIKG |
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