Sample 3300028750

Basic Information
IMG/M Taxon OID	3300028750 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321316 \| Ga0307329
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	35659319
Sequencing Scaffolds	22
Novel Protein Genes	23
Associated Families	19

Dataset Contents

Total Genome Size

35659319

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → Viruses → environmental samples → uncultured virus	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → environmental samples → uncultured virus

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F017318	Metagenome / Metatranscriptome	241	Y
F025291	Metagenome / Metatranscriptome	202	N
F029768	Metagenome / Metatranscriptome	187	N
F035785	Metagenome / Metatranscriptome	171	Y
F049017	Metagenome / Metatranscriptome	147	N
F051952	Metatranscriptome	143	N
F059033	Metagenome / Metatranscriptome	134	N
F062800	Metagenome / Metatranscriptome	130	N
F064746	Metagenome / Metatranscriptome	128	N
F067770	Metagenome / Metatranscriptome	125	N
F068879	Metagenome / Metatranscriptome	124	N
F070158	Metagenome / Metatranscriptome	123	N
F070165	Metagenome / Metatranscriptome	123	N
F070166	Metatranscriptome	123	N
F095527	Metagenome / Metatranscriptome	105	N
F098317	Metagenome / Metatranscriptome	104	Y
F101222	Metagenome / Metatranscriptome	102	N
F101223	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307329_102671	Not Available	1703	Open in IMG/M
Ga0307329_103012	Not Available	1612	Open in IMG/M
Ga0307329_106129	All Organisms → Viruses → environmental samples → uncultured virus	1119	Open in IMG/M
Ga0307329_106519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	1083	Open in IMG/M
Ga0307329_107504	Not Available	1000	Open in IMG/M
Ga0307329_108351	All Organisms → cellular organisms → Archaea → Euryarchaeota	941	Open in IMG/M
Ga0307329_109251	All Organisms → Viruses → environmental samples → uncultured virus	887	Open in IMG/M
Ga0307329_109973	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	848	Open in IMG/M
Ga0307329_110036	Not Available	844	Open in IMG/M
Ga0307329_110716	Not Available	813	Open in IMG/M
Ga0307329_110977	Not Available	801	Open in IMG/M
Ga0307329_111547	Not Available	777	Open in IMG/M
Ga0307329_112351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	745	Open in IMG/M
Ga0307329_112927	Not Available	725	Open in IMG/M
Ga0307329_113038	Not Available	721	Open in IMG/M
Ga0307329_114199	Not Available	682	Open in IMG/M
Ga0307329_114688	Not Available	668	Open in IMG/M
Ga0307329_114769	Not Available	666	Open in IMG/M
Ga0307329_115194	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
Ga0307329_115479	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	648	Open in IMG/M
Ga0307329_118172	Not Available	587	Open in IMG/M
Ga0307329_118177	Not Available	587	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307329_102671	Ga0307329_1026713	F059033	MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQ
Ga0307329_103012	Ga0307329_1030122	F101223	MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSLIKRNTLDYVIKQAQEAQAKEKAMKAENSKIPPDVSHISYG
Ga0307329_106129	Ga0307329_1061291	F017318	VNRRSSQNKYPVNMRSPTAASPLKFQRTVEGAFDINCDGINPSLGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK
Ga0307329_106519	Ga0307329_1065192	F067770	MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNK
Ga0307329_107504	Ga0307329_1075042	F101222	MSVWVAIAINIVVYLVSFAYAWGKLNTKISEIEKRYYELDDKVTAITDCSVQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEVKNGKYIK
Ga0307329_108351	Ga0307329_1083511	F095527	SKATRISMLILIPALLLTTIPVSILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNSKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL
Ga0307329_109251	Ga0307329_1092511	F017318	VENGHLLTNRQNKRAAKRRVSQNKSPLPNISAPIQAKPLKFERTVEDAYNIVCDGINPSIGSFNFSLNDLPSYTEFTGLFDLYRIDEIEIEWYPEYTVLSDGGVTSPAVNVQLNTAIDPAGNTPAAVTDVLQYRTLHATGISKSHKRRFVPAYLMDGISPCKCYISTNSPSSNLWGIAYGVSPTGTAMTFRSRARFFLSLAQSR
Ga0307329_109973	Ga0307329_1099733	F068879	RPVYVIGAPHFANFMAKEDGQVSSGAACPGYRRKLPHGVTVFANARINQ
Ga0307329_110036	Ga0307329_1100361	F070166	MNIDNYVVQIHKRTKRITLQRFLVSKIAYGKDFSLIELAALFHNQLWLQTKCSTDAQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQNMEAQLRNSIFTTWRKSQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTNKEIISRIKRTIQVKEAIKRIDPNWRNTQVAEASGGKVIPKKVG
Ga0307329_110716	Ga0307329_1107161	F070165	MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSIKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV
Ga0307329_110977	Ga0307329_1109772	F025291	MVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307329_111547	Ga0307329_1115471	F035785	KMETKQIEAETAKKMSENELMDAVWEAPENSVLEIFAADPDNQSGDNDGVYLEVVKLDDEESVVRDRWPNLDGTRHIVRTKDIAAIYRALVDQVEEA
Ga0307329_112351	Ga0307329_1123511	F070158	YYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY
Ga0307329_112927	Ga0307329_1129271	F062800	TSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307329_113038	Ga0307329_1130381	F025291	GGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307329_114199	Ga0307329_1141991	F025291	KQPNQKKNNNNISRRDKHHMVNLKREINIFRERAWRVITYNYHLGDNGMTGLYTLNVGADQRYMTFQTLLTTDEFLNMAIVYNDFKIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRTCADDSARIFAPKALAPQSCEWNLQGIGPNFNIWLDTGSTIPGQFQIGNYIFGSIPINLGWEVKFQLVCEFTNPK
Ga0307329_114688	Ga0307329_1146881	F051952	PDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGTEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTSDTSKTDYLEFLFRNFNTNRVQLFPQKKPGEKLHSSSN
Ga0307329_114769	Ga0307329_1147691	F098317	QRKWSEMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF
Ga0307329_115194	Ga0307329_1151941	F012026	LISKRAEAINVLHRLEKVEDRYNPRIISEINGYKQAIEELSKELNRLEVEKGALMEAEEAARKEYVAALAAYDELYGRFPNAEKEAGELLKRYAKHVEAAQRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAYEIEHKGGD
Ga0307329_115479	Ga0307329_1154791	F064746	NKIIWMALILLLGVFAIGGMSSTNGNDSAKNVTIDGYTFEGDFDDKWTNGYGDTETYKPANLEDIQFGIPDGAYDWTGAENYNAFRYRSGEPSGSITKYGWAHIFVLKPDDDLSYSSSIEMLRHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVQGELITSEDYPAFINDNSQGAIAFFLDDGKVCVIDAFTTNNFGMSAWDIIDSIT
Ga0307329_118172	Ga0307329_1181721	F070165	PTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307329_118177	Ga0307329_1181771	F049017	IAKYSKTCGKNVPGNSRLFFVEAGKISSITVTLNEISVITMSDTTKFREFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNANAWLSGYTFKDKNRRAYNKITTNFDTGAKPSDEGTAAYNITLEAEGFDDELAFDTTLNAAIVGGTATFIDYN
Ga0307329_119958	Ga0307329_1199581	F029768	KMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028750: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences