Sample 3300029037

Overview

Basic Information
IMG/M Taxon OID	3300029037 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193699 \| Ga0169705
Sample Name	Human fecal microbial communities from mother in Denmark - 42_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	100682777
Sequencing Scaffolds	7
Novel Protein Genes	8
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola massiliensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F051210	Metagenome / Metatranscriptome	144	Y
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F071326	Metagenome / Metatranscriptome	122	Y

Family

Category

Number of Sequences

3D Structure?

F047125

Metagenome / Metatranscriptome

150

F051210

Metagenome / Metatranscriptome

144

F051936

Metagenome

143

F055775

Metagenome

138

F062845

Metagenome

130

F067845

Metagenome

125

F071326

Metagenome / Metatranscriptome

122

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169705_100004	Not Available	365782	Open in IMG/M
Ga0169705_100011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola massiliensis	213621	Open in IMG/M
Ga0169705_100579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25627	Open in IMG/M
Ga0169705_100745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	20420	Open in IMG/M
Ga0169705_105247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2366	Open in IMG/M
Ga0169705_119982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	757	Open in IMG/M
Ga0169705_131363	Not Available	534	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169705_100004

Not Available

365782

Open in IMG/M

Ga0169705_100011

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola massiliensis

213621

Open in IMG/M

Ga0169705_100579

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

25627

Open in IMG/M

Ga0169705_100745

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

20420

Open in IMG/M

Ga0169705_105247

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2366

Open in IMG/M

Ga0169705_119982

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

757

Open in IMG/M

Ga0169705_131363

Not Available

534

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169705_100004	Ga0169705_100004111	F051210	MNTQYLQMMQTPSMMEALINSSVSAEDANLRSREYAKMFSRNDEMKDLFGLGNAGNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDIQAMGNFTLNITPTTNADYSSLIGRKIIPGTVRVKIATATEKFELIDNGQGAFMAVAGKISNGTINYLNGRVEFTLATALAGDAATETITIVGKEDVTGTPCNTIGASNAHANDKRFIAKMQQLGLATVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKVINYKLVSTLEEGYNGNVMADLDLTQGAMTGQFMDYRSRVDLFDAYLINVESALATKAVKGVDVTAYVAGNMASNQFQKGGMIGKWERNTKMTYINDLLGWYNGIPVLRSTDIAEAPGEGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAPELVQKVTFKFGI
Ga0169705_100004	Ga0169705_100004129	F071326	MADMISKNLDKANRLYSIGMKNIKLQLKLLGTEFVVLRPKSNSKWKNVFGGTYSSSSTLENDYDQFTTILILNQNELRDVWNRNRDNLEVYTDDGSLEVGDELQYTRGKYTFRFKISLKMGYSEVAEVFYVYTLNSIIETLDM
Ga0169705_100011	Ga0169705_10001135	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISFLVLIIRYLSIHISMKK
Ga0169705_100579	Ga0169705_10057910	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEILQQEGKRRGWWL
Ga0169705_100745	Ga0169705_10074511	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNSVPSRSCA
Ga0169705_105247	Ga0169705_1052472	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS
Ga0169705_119982	Ga0169705_1199821	F067845	LLVCLLAGVLAFGVLTACSGLGNVNTGTDAEKAAELAQQLRVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAKLLNDAVGHRELGAAFIDYNGTAYVVAVFR
Ga0169705_131363	Ga0169705_1313631	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN

Scaffold ID

Protein ID

Family

Sequence

Ga0169705_100004

Ga0169705_100004111

F051210

MNTQYLQMMQTPSMMEALINSSVSAEDANLRSREYAKMFSRNDEMKDLFGLGNAGNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDIQAMGNFTLNITPTTNADYSSLIGRKIIPGTVRVKIATATEKFELIDNGQGAFMAVAGKISNGTINYLNGRVEFTLATALAGDAATETITIVGKEDVTGTPCNTIGASNAHANDKRFIAKMQQLGLATVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKVINYKLVSTLEEGYNGNVMADLDLTQGAMTGQFMDYRSRVDLFDAYLINVESALATKAVKGVDVTAYVAGNMASNQFQKGGMIGKWERNTKMTYINDLLGWYNGIPVLRSTDIAEAPGEGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAPELVQKVTFKFGI

Ga0169705_100004

Ga0169705_100004129

F071326

MADMISKNLDKANRLYSIGMKNIKLQLKLLGTEFVVLRPKSNSKWKNVFGGTYSSSSTLENDYDQFTTILILNQNELRDVWNRNRDNLEVYTDDGSLEVGDELQYTRGKYTFRFKISLKMGYSEVAEVFYVYTLNSIIETLDM

Ga0169705_100011

Ga0169705_10001135

F051936

MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISFLVLIIRYLSIHISMKK

Ga0169705_100579

Ga0169705_10057910

F047125

MDVVLLLMVLGVMLSGFWAADALDHMRKEILQQEGKRRGWWL

Ga0169705_100745

Ga0169705_10074511

F062845

MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNSVPSRSCA

Ga0169705_105247

Ga0169705_1052472

F047125

MDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS

Ga0169705_119982

Ga0169705_1199821

F067845

LLVCLLAGVLAFGVLTACSGLGNVNTGTDAEKAAELAQQLRVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAKLLNDAVGHRELGAAFIDYNGTAYVVAVFR

Ga0169705_131363

Ga0169705_1313631

F055775

MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029037: Human fecal microbial communities from mother in Denmark - 42_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences