NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029039

3300029039: Human fecal microbial communities from mother in Denmark - 335_M



Overview

Basic Information
IMG/M Taxon OID3300029039 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193643 | Ga0169649
Sample NameHuman fecal microbial communities from mother in Denmark - 335_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size158640502
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039198Metagenome164Y
F068811Metagenome124N
F078693Metagenome116N
F081453Metagenome114N
F087335Metagenome110N
F089054Metagenome109N
F092227Metagenome107N
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169649_100170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii60683Open in IMG/M
Ga0169649_100373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis37399Open in IMG/M
Ga0169649_100625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii25581Open in IMG/M
Ga0169649_100882Not Available19818Open in IMG/M
Ga0169649_101544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium12971Open in IMG/M
Ga0169649_103412All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6541Open in IMG/M
Ga0169649_104433All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5256Open in IMG/M
Ga0169649_119675All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1510Open in IMG/M
Ga0169649_133574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes908Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169649_100170Ga0169649_10017059F092227MNEQKHKRWMRIGCLVLAGVFALSLLSSVIMMLLY
Ga0169649_100373Ga0169649_10037333F081453MSPFFLLAGDNIIEKHIFANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0169649_100625Ga0169649_10062520F068811MDQDGSEHNICSNREGLCPGKKQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAASLILNENVSETLCIFSIDKTNCCRI
Ga0169649_100882Ga0169649_10088221F089054MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTHIRLKLREILKVNLTDITIIDIISLP
Ga0169649_101544Ga0169649_1015448F087335MIGLYFNDANVLTENREEEQYAEAALNSILAGKTADTVMCILPCFYDAPLHKGLLYNLDDGTTLQIRPILNEVGEPELLIRCVTEESVETIYQRGSNYD
Ga0169649_103412Ga0169649_1034125F039198MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC
Ga0169649_104433Ga0169649_1044333F078693MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC
Ga0169649_119675Ga0169649_1196752F092227MNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0169649_133574Ga0169649_1335742F097493MYKFYSKNGTAQFYERGVKIDGTVYGIQKDSDILRIKRGIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSVMNGDEMSQDEINAMLM
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