NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029055

3300029055: Human fecal microbial communities from mother in Denmark - 272_M



Overview

Basic Information
IMG/M Taxon OID3300029055 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193611 | Ga0169617
Sample NameHuman fecal microbial communities from mother in Denmark - 272_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size160551167
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D51
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039198Metagenome164Y
F042936Metagenome157N
F044554Metagenome154N
F056682Metagenome137Y
F059106Metagenome134N
F068941Metagenome124N
F089005Metagenome109N
F089053Metagenome109Y
F092228Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169617_100097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii80049Open in IMG/M
Ga0169617_100112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales74908Open in IMG/M
Ga0169617_100372All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii35138Open in IMG/M
Ga0169617_102251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae10234Open in IMG/M
Ga0169617_103606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6978Open in IMG/M
Ga0169617_104097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae6232Open in IMG/M
Ga0169617_111241All Organisms → cellular organisms → Bacteria2639Open in IMG/M
Ga0169617_115466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D51952Open in IMG/M
Ga0169617_127440All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1107Open in IMG/M
Ga0169617_136899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes806Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169617_100097Ga0169617_10009731F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIVERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPAKIAVKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS
Ga0169617_100112Ga0169617_1001121F059106MHAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0169617_100372Ga0169617_1003721F089005LTKSKQRSIITLALLRLATSNEESKQALKVRRTLKIEQRENSKETR
Ga0169617_102251Ga0169617_1022514F042936VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKAYFRSRLRGKG
Ga0169617_103606Ga0169617_10360611F089053MEGPRPDKFAFGVRIGRVVDECRPVKGCIRKWIHGFAYGQPELSTAGEVNVKNMEVSL
Ga0169617_104097Ga0169617_1040974F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0169617_111241Ga0169617_1112413F044554GSVSWWSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169617_115466Ga0169617_1154664F056682MKMQSRAGKVANQSIRQGEIYSASFGVLPSKNRSTLPIQELRKNRENQEVL
Ga0169617_127440Ga0169617_1274402F039198MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKKEKCSVATFVTGKENYPEVLKKIVTKQVELDKNVC
Ga0169617_136899Ga0169617_1368991F068941MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
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