Basic Information | |
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IMG/M Taxon OID | 3300029113 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127425 | Gp0193151 | Ga0168853 |
Sample Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021310-108 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 153472051 |
Sequencing Scaffolds | 11 |
Novel Protein Genes | 12 |
Associated Families | 11 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
Location Information | ||||||||
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Location | China: Beijing, Peking Union Medical College | |||||||
Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026489 | Metagenome | 197 | N |
F029444 | Metagenome | 188 | Y |
F052660 | Metagenome | 142 | N |
F067720 | Metagenome | 125 | Y |
F068811 | Metagenome | 124 | N |
F076189 | Metagenome | 118 | N |
F076190 | Metagenome | 118 | Y |
F089054 | Metagenome | 109 | N |
F097172 | Metagenome / Metatranscriptome | 104 | Y |
F099451 | Metagenome | 103 | N |
F105374 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0168853_100170 | Not Available | 86141 | Open in IMG/M |
Ga0168853_100349 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 57109 | Open in IMG/M |
Ga0168853_100978 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 27048 | Open in IMG/M |
Ga0168853_101087 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 24485 | Open in IMG/M |
Ga0168853_101527 | Not Available | 17879 | Open in IMG/M |
Ga0168853_101705 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 16210 | Open in IMG/M |
Ga0168853_102229 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 12358 | Open in IMG/M |
Ga0168853_102268 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes | 12087 | Open in IMG/M |
Ga0168853_103316 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 8103 | Open in IMG/M |
Ga0168853_107261 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3354 | Open in IMG/M |
Ga0168853_107518 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3215 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0168853_100170 | Ga0168853_1001702 | F089054 | MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP |
Ga0168853_100349 | Ga0168853_1003494 | F067720 | MSSTTYEHFVDTNKMYAAQEQFRHVTKMVCACFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSLSASVARA |
Ga0168853_100978 | Ga0168853_1009781 | F026489 | LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF |
Ga0168853_101087 | Ga0168853_1010879 | F052660 | MCILRVLPENTPKKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS |
Ga0168853_101527 | Ga0168853_10152728 | F099451 | MEIKNVGQLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE |
Ga0168853_101705 | Ga0168853_1017053 | F097172 | MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGCDKKGYVMDGFSKSSFYKDLNSLPAVKMGKTTINVPAVTSSVKSISKEKGKPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCFYYGFCKPIKNGKKYTLENLYPDTVGNYGDLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTKLKKGRTYVFSVDNIGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYKK |
Ga0168853_101705 | Ga0168853_1017054 | F097172 | MKKNVLKKLMCAVLAVACVATAVVPAMADNVVTAEATTKKVTSVYKYHLEGYDKKGYVMDGFSKVAFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGKPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFGGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVYVIDNIGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK |
Ga0168853_102229 | Ga0168853_1022291 | F076190 | EARSGGWNGRSSWARTAGGSITIFVKNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL |
Ga0168853_102268 | Ga0168853_1022687 | F105374 | MKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAILRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP |
Ga0168853_103316 | Ga0168853_1033169 | F068811 | MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSINKTNCCRIK |
Ga0168853_107261 | Ga0168853_1072615 | F076189 | VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSXXXXXXXXXXXXXXHENTFWLLIFYANYAIL |
Ga0168853_107518 | Ga0168853_1075184 | F029444 | MGVSERLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF |
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