Basic Information | |
---|---|
IMG/M Taxon OID | 3300029117 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127425 | Gp0193083 | Ga0168818 |
Sample Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021213-32 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 157510976 |
Sequencing Scaffolds | 13 |
Novel Protein Genes | 14 |
Associated Families | 12 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium | 1 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | China: Beijing, Peking Union Medical College | |||||||
Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F042936 | Metagenome | 157 | N |
F047126 | Metagenome | 150 | N |
F068811 | Metagenome | 124 | N |
F081354 | Metagenome | 114 | Y |
F081453 | Metagenome | 114 | N |
F087336 | Metagenome | 110 | N |
F089005 | Metagenome | 109 | N |
F090515 | Metagenome | 108 | N |
F092228 | Metagenome | 107 | N |
F097172 | Metagenome / Metatranscriptome | 104 | Y |
F099269 | Metagenome | 103 | N |
F101356 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0168818_100002 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 662142 | Open in IMG/M |
Ga0168818_100031 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 219849 | Open in IMG/M |
Ga0168818_100138 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 86834 | Open in IMG/M |
Ga0168818_100147 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 84240 | Open in IMG/M |
Ga0168818_100178 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 74162 | Open in IMG/M |
Ga0168818_100431 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 35840 | Open in IMG/M |
Ga0168818_100670 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 25046 | Open in IMG/M |
Ga0168818_100845 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 20582 | Open in IMG/M |
Ga0168818_100901 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 19233 | Open in IMG/M |
Ga0168818_100937 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 18507 | Open in IMG/M |
Ga0168818_100953 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 18143 | Open in IMG/M |
Ga0168818_102168 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens | 8627 | Open in IMG/M |
Ga0168818_148561 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium | 559 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0168818_100002 | Ga0168818_100002339 | F092228 | MKKKCTLVLISVLTVVCIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTIENIGNIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLQSCKLLKSKNANYVNGLRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS |
Ga0168818_100031 | Ga0168818_100031158 | F081453 | MFPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ |
Ga0168818_100138 | Ga0168818_10013889 | F097172 | MKKNVFKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHLEGCDKNGYPVDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGNPEYESYVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKYPVDKIKFTTRLKKGQTYVFVID |
Ga0168818_100147 | Ga0168818_1001476 | F068811 | MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI |
Ga0168818_100178 | Ga0168818_1001783 | F097172 | MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKYHLIGCDKKGYVMDGFSKAAFYKDLNSLPTVKTGKTTVNVPAVTSSVKSVSKEKGKPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPVKNEKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYTDVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK |
Ga0168818_100431 | Ga0168818_10043116 | F087336 | MHCLLRGMVAELEQVPKAFRAAVNQRRAAAKERIKDDAIGHGRVSNRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPFKNKQKKSTPRGKLSKYSFRKQSAN |
Ga0168818_100670 | Ga0168818_10067010 | F090515 | LQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS |
Ga0168818_100845 | Ga0168818_1008451 | F047126 | MTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC |
Ga0168818_100901 | Ga0168818_1009016 | F042936 | VWKTKEGIMKTSEIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGKG |
Ga0168818_100937 | Ga0168818_10093724 | F089005 | LTKSKRRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKK |
Ga0168818_100953 | Ga0168818_1009536 | F090515 | LQGTAPGRVACLEFAEGEKRKTNIAADYAVKVPAFTALLCRYIGSIRTFLKS |
Ga0168818_102168 | Ga0168818_1021686 | F099269 | VHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV |
Ga0168818_121364 | Ga0168818_1213642 | F101356 | VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ |
Ga0168818_148561 | Ga0168818_1485612 | F081354 | LSAKKALDLVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFSPFHL |
⦗Top⦘ |