NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029117

3300029117: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021213-32



Overview

Basic Information
IMG/M Taxon OID3300029117 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127425 | Gp0193083 | Ga0168818
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021213-32
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size157510976
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042936Metagenome157N
F047126Metagenome150N
F068811Metagenome124N
F081354Metagenome114Y
F081453Metagenome114N
F087336Metagenome110N
F089005Metagenome109N
F090515Metagenome108N
F092228Metagenome107N
F097172Metagenome / Metatranscriptome104Y
F099269Metagenome103N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168818_100002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii662142Open in IMG/M
Ga0168818_100031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis219849Open in IMG/M
Ga0168818_100138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae86834Open in IMG/M
Ga0168818_100147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii84240Open in IMG/M
Ga0168818_100178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis74162Open in IMG/M
Ga0168818_100431All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis35840Open in IMG/M
Ga0168818_100670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales25046Open in IMG/M
Ga0168818_100845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales20582Open in IMG/M
Ga0168818_100901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales19233Open in IMG/M
Ga0168818_100937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii18507Open in IMG/M
Ga0168818_100953All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18143Open in IMG/M
Ga0168818_102168All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens8627Open in IMG/M
Ga0168818_148561All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium559Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168818_100002Ga0168818_100002339F092228MKKKCTLVLISVLTVVCIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTIENIGNIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLQSCKLLKSKNANYVNGLRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0168818_100031Ga0168818_100031158F081453MFPFFLLAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0168818_100138Ga0168818_10013889F097172MKKNVFKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHLEGCDKNGYPVDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGNPEYESYVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKYPVDKIKFTTRLKKGQTYVFVID
Ga0168818_100147Ga0168818_1001476F068811MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0168818_100178Ga0168818_1001783F097172MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKYHLIGCDKKGYVMDGFSKAAFYKDLNSLPTVKTGKTTVNVPAVTSSVKSVSKEKGKPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPVKNEKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYTDVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0168818_100431Ga0168818_10043116F087336MHCLLRGMVAELEQVPKAFRAAVNQRRAAAKERIKDDAIGHGRVSNRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPFKNKQKKSTPRGKLSKYSFRKQSAN
Ga0168818_100670Ga0168818_10067010F090515LQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS
Ga0168818_100845Ga0168818_1008451F047126MTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168818_100901Ga0168818_1009016F042936VWKTKEGIMKTSEIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0168818_100937Ga0168818_10093724F089005LTKSKRRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKK
Ga0168818_100953Ga0168818_1009536F090515LQGTAPGRVACLEFAEGEKRKTNIAADYAVKVPAFTALLCRYIGSIRTFLKS
Ga0168818_102168Ga0168818_1021686F099269VHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0168818_121364Ga0168818_1213642F101356VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0168818_148561Ga0168818_1485612F081354LSAKKALDLVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFSPFHL

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