NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029128

3300029128: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012243-142



Overview

Basic Information
IMG/M Taxon OID3300029128 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127425 | Gp0193010 | Ga0168745
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012243-142
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size163379155
Sequencing Scaffolds13
Novel Protein Genes19
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F047126Metagenome150N
F052660Metagenome142N
F057001Metagenome137Y
F064725Metagenome128N
F067845Metagenome125N
F068811Metagenome124N
F071325Metagenome122N
F076189Metagenome118N
F076653Metagenome118N
F077313Metagenome117N
F081453Metagenome114N
F083451Metagenome113N
F083452Metagenome113N
F087334Metagenome110N
F087335Metagenome110N
F088914Metagenome109N
F089053Metagenome109Y
F092228Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168745_100050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii207053Open in IMG/M
Ga0168745_100057All Organisms → Viruses → Duplodnaviria → Heunggongvirae197527Open in IMG/M
Ga0168745_100082All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis168103Open in IMG/M
Ga0168745_100747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae33252Open in IMG/M
Ga0168745_102557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes10090Open in IMG/M
Ga0168745_102791All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii9134Open in IMG/M
Ga0168745_104137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae5917Open in IMG/M
Ga0168745_104191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium5837Open in IMG/M
Ga0168745_104292All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile5687Open in IMG/M
Ga0168745_104715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile5092Open in IMG/M
Ga0168745_105134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4613Open in IMG/M
Ga0168745_105152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4591Open in IMG/M
Ga0168745_127772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes679Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168745_100050Ga0168745_10005019F092228MKKKCTFVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDEMLATKNFLYCYTINYILPRGMANLWVKGYLIDQLAIS
Ga0168745_100057Ga0168745_100057103F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIRHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVNGERRTGWNDDNMSGRGLEHLTSFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0168745_100057Ga0168745_100057130F064725VRVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
Ga0168745_100057Ga0168745_100057138F077313MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNARTWTDTYDKNIAQRQGYQSRILQALANTDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0168745_100057Ga0168745_100057186F076653MTLSDKYFGWKDIFFDRFVYCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRRNIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYSYYTFNK
Ga0168745_100057Ga0168745_100057195F083451MDRNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDHD
Ga0168745_100057Ga0168745_10005759F057001MPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALAKEKEMVIQLCKEILPRVNDTFCAYKEVEKEYYDKQDQANNSKLPLDKVNSIAVFGNTHKRFGYCEPIAYNDTGNVPYYELFNGSDKRIIKVAIPIKRYTYNLIAKCITYYLTHPKNDR
Ga0168745_100057Ga0168745_10005764F083452MSGRVKIKSKDKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0168745_100082Ga0168745_10008281F081453MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGALGRKCVQ
Ga0168745_100747Ga0168745_10074720F087334MTSRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0168745_102557Ga0168745_10255711F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSYGRFLHGGILMGIALPIPSHRAKSHNFACWWPAAAGHSRSADALPGKSNF
Ga0168745_102791Ga0168745_1027917F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0168745_104137Ga0168745_1041378F047126VYLKTKKMANISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTTAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168745_104191Ga0168745_1041915F087335MLELYFNDGNLLPENREEEQSAETVLNDILAGKTANTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0168745_104292Ga0168745_1042928F071325LSDSSIIISKVVLFVKHFFDIFLSFLNAFLKAFHPHAVRFPAAFLLVHRFYLAFEESLSCATAHL
Ga0168745_104715Ga0168745_1047159F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIVFSAWYAANALEMDVK
Ga0168745_105134Ga0168745_1051346F076189VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL
Ga0168745_105152Ga0168745_1051522F068811MDQDGSEHNICSNREGLCPGKKPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0168745_127772Ga0168745_1277722F089053MEGPRLDKFRFGSRNGCVVGGCGPIKGCIRKWIYGFANGQPELSTAEEVNVKNMGAFL

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