Basic Information | |
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IMG/M Taxon OID | 3300029128 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127425 | Gp0193010 | Ga0168745 |
Sample Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012243-142 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 163379155 |
Sequencing Scaffolds | 13 |
Novel Protein Genes | 19 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
Location Information | ||||||||
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Location | China: Beijing, Peking Union Medical College | |||||||
Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042095 | Metagenome | 159 | N |
F047126 | Metagenome | 150 | N |
F052660 | Metagenome | 142 | N |
F057001 | Metagenome | 137 | Y |
F064725 | Metagenome | 128 | N |
F067845 | Metagenome | 125 | N |
F068811 | Metagenome | 124 | N |
F071325 | Metagenome | 122 | N |
F076189 | Metagenome | 118 | N |
F076653 | Metagenome | 118 | N |
F077313 | Metagenome | 117 | N |
F081453 | Metagenome | 114 | N |
F083451 | Metagenome | 113 | N |
F083452 | Metagenome | 113 | N |
F087334 | Metagenome | 110 | N |
F087335 | Metagenome | 110 | N |
F088914 | Metagenome | 109 | N |
F089053 | Metagenome | 109 | Y |
F092228 | Metagenome | 107 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0168745_100050 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 207053 | Open in IMG/M |
Ga0168745_100057 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae | 197527 | Open in IMG/M |
Ga0168745_100082 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 168103 | Open in IMG/M |
Ga0168745_100747 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 33252 | Open in IMG/M |
Ga0168745_102557 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 10090 | Open in IMG/M |
Ga0168745_102791 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 9134 | Open in IMG/M |
Ga0168745_104137 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 5917 | Open in IMG/M |
Ga0168745_104191 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium | 5837 | Open in IMG/M |
Ga0168745_104292 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 5687 | Open in IMG/M |
Ga0168745_104715 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile | 5092 | Open in IMG/M |
Ga0168745_105134 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4613 | Open in IMG/M |
Ga0168745_105152 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4591 | Open in IMG/M |
Ga0168745_127772 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 679 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0168745_100050 | Ga0168745_10005019 | F092228 | MKKKCTFVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDEMLATKNFLYCYTINYILPRGMANLWVKGYLIDQLAIS |
Ga0168745_100057 | Ga0168745_100057103 | F042095 | MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIRHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVNGERRTGWNDDNMSGRGLEHLTSFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE |
Ga0168745_100057 | Ga0168745_100057130 | F064725 | VRVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI |
Ga0168745_100057 | Ga0168745_100057138 | F077313 | MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNARTWTDTYDKNIAQRQGYQSRILQALANTDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG |
Ga0168745_100057 | Ga0168745_100057186 | F076653 | MTLSDKYFGWKDIFFDRFVYCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRRNIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYSYYTFNK |
Ga0168745_100057 | Ga0168745_100057195 | F083451 | MDRNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDHD |
Ga0168745_100057 | Ga0168745_10005759 | F057001 | MPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALAKEKEMVIQLCKEILPRVNDTFCAYKEVEKEYYDKQDQANNSKLPLDKVNSIAVFGNTHKRFGYCEPIAYNDTGNVPYYELFNGSDKRIIKVAIPIKRYTYNLIAKCITYYLTHPKNDR |
Ga0168745_100057 | Ga0168745_10005764 | F083452 | MSGRVKIKSKDKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK |
Ga0168745_100082 | Ga0168745_10008281 | F081453 | MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVKGALGRKCVQ |
Ga0168745_100747 | Ga0168745_10074720 | F087334 | MTSRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ |
Ga0168745_102557 | Ga0168745_10255711 | F052660 | MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSYGRFLHGGILMGIALPIPSHRAKSHNFACWWPAAAGHSRSADALPGKSNF |
Ga0168745_102791 | Ga0168745_1027917 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR |
Ga0168745_104137 | Ga0168745_1041378 | F047126 | VYLKTKKMANISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTTAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC |
Ga0168745_104191 | Ga0168745_1041915 | F087335 | MLELYFNDGNLLPENREEEQSAETVLNDILAGKTANTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD |
Ga0168745_104292 | Ga0168745_1042928 | F071325 | LSDSSIIISKVVLFVKHFFDIFLSFLNAFLKAFHPHAVRFPAAFLLVHRFYLAFEESLSCATAHL |
Ga0168745_104715 | Ga0168745_1047159 | F088914 | VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIVFSAWYAANALEMDVK |
Ga0168745_105134 | Ga0168745_1051346 | F076189 | VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL |
Ga0168745_105152 | Ga0168745_1051522 | F068811 | MDQDGSEHNICSNREGLCPGKKPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK |
Ga0168745_127772 | Ga0168745_1277722 | F089053 | MEGPRLDKFRFGSRNGCVVGGCGPIKGCIRKWIYGFANGQPELSTAEEVNVKNMGAFL |
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