NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029137

3300029137: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012075-46



Overview

Basic Information
IMG/M Taxon OID3300029137 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192996 | Ga0168731
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012075-46
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size118804893
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051936Metagenome143N
F089005Metagenome109N
F090515Metagenome108N
F092228Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168731_100003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii515577Open in IMG/M
Ga0168731_100171All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides93432Open in IMG/M
Ga0168731_100641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales33048Open in IMG/M
Ga0168731_101450All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales12670Open in IMG/M
Ga0168731_109125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1448Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168731_100003Ga0168731_100003324F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNVIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNYCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0168731_100171Ga0168731_10017160F051936MKQEGTGQVLFFPLALRGKAFGFSVLQKHAVMTPAISIFFAMLIIRYLSIQISIKK
Ga0168731_100641Ga0168731_1006411F089005LTKSKQRSIIALALLRLATSNEESKQALKVHRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI
Ga0168731_101450Ga0168731_1014506F051936MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFAILIIRYLSIHISIKK
Ga0168731_109125Ga0168731_1091251F090515EFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
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