NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029156

3300029156: Aquariaum water viral communities from Chicago, USA - Oceanarium - OC2



Overview

Basic Information
IMG/M Taxon OID3300029156 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127413 | Gp0192424 | Ga0168038
Sample NameAquariaum water viral communities from Chicago, USA - Oceanarium - OC2
Sequencing StatusPermanent Draft
Sequencing CenterMichigan State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9791825
Sequencing Scaffolds2
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquariaum Water Viral Communities From Chicago, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: Chicago
CoordinatesLat. (o)41.87Long. (o)-87.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015571Metagenome / Metatranscriptome253Y
F059699Metagenome133Y
F100694Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168038_104253All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.576Open in IMG/M
Ga0168038_105091Not Available514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168038_103602Ga0168038_1036024F100694TWSNTSFLRVTNSGTGEVGNFAAMPAVSATGVFRAKVGSPVVTHTIPVTSGGTTYYVMVSTVA
Ga0168038_104253Ga0168038_1042532F015571FGVELFVSEVPSNDFRCGIANDIADDLFETYSRQAENIVTEVMLAQKTRLIEVMQSISHCCGVDELGVDDNTGETKTRKRKIYDTTIQKALEMCETFKGFNLNADPELEEARASLERALSDVSASDIRESDAVRSSVKEDVDTILSKFSSFQCV
Ga0168038_105091Ga0168038_1050911F059699MSNPLVRAPRLPSAPIEYDQVFMESLLSTIRLYFNQLDNPGAVLAATQNINNAIVTALSFSQPGITPGTLRISLPTQADQAAGRLKTGDVYYDTGTFVLKVAP

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