Basic Information | |
---|---|
IMG/M Taxon OID | 3300029156 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127413 | Gp0192424 | Ga0168038 |
Sample Name | Aquariaum water viral communities from Chicago, USA - Oceanarium - OC2 |
Sequencing Status | Permanent Draft |
Sequencing Center | Michigan State University |
Published? | N |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 9791825 |
Sequencing Scaffolds | 2 |
Novel Protein Genes | 3 |
Associated Families | 3 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
Not Available | 1 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Aquariaum Water Viral Communities From Chicago, Usa |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | na → na → na |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | USA: Chicago | |||||||
Coordinates | Lat. (o) | 41.87 | Long. (o) | -87.61 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015571 | Metagenome / Metatranscriptome | 253 | Y |
F059699 | Metagenome | 133 | Y |
F100694 | Metagenome / Metatranscriptome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0168038_104253 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 576 | Open in IMG/M |
Ga0168038_105091 | Not Available | 514 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0168038_103602 | Ga0168038_1036024 | F100694 | TWSNTSFLRVTNSGTGEVGNFAAMPAVSATGVFRAKVGSPVVTHTIPVTSGGTTYYVMVSTVA |
Ga0168038_104253 | Ga0168038_1042532 | F015571 | FGVELFVSEVPSNDFRCGIANDIADDLFETYSRQAENIVTEVMLAQKTRLIEVMQSISHCCGVDELGVDDNTGETKTRKRKIYDTTIQKALEMCETFKGFNLNADPELEEARASLERALSDVSASDIRESDAVRSSVKEDVDTILSKFSSFQCV |
Ga0168038_105091 | Ga0168038_1050911 | F059699 | MSNPLVRAPRLPSAPIEYDQVFMESLLSTIRLYFNQLDNPGAVLAATQNINNAIVTALSFSQPGITPGTLRISLPTQADQAAGRLKTGDVYYDTGTFVLKVAP |
⦗Top⦘ |