NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029194

3300029194: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011681-56



Overview

Basic Information
IMG/M Taxon OID3300029194 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192957 | Ga0168692
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011681-56
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size99119781
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
Not Available1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F047125Metagenome / Metatranscriptome150N
F047126Metagenome150N
F056309Metagenome137N
F062845Metagenome130N
F070093Metagenome123N
F071325Metagenome122N
F087336Metagenome110N
F092228Metagenome107N
F097172Metagenome / Metatranscriptome104Y
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168692_100002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii472495Open in IMG/M
Ga0168692_100320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena30124Open in IMG/M
Ga0168692_100542All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae20067Open in IMG/M
Ga0168692_100570All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii19292Open in IMG/M
Ga0168692_100780All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales15558Open in IMG/M
Ga0168692_100912All Organisms → cellular organisms → Bacteria13943Open in IMG/M
Ga0168692_100955All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae13485Open in IMG/M
Ga0168692_100999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae13051Open in IMG/M
Ga0168692_102614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6477Open in IMG/M
Ga0168692_104103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena4500Open in IMG/M
Ga0168692_107637Not Available2473Open in IMG/M
Ga0168692_107730All Organisms → Viruses → Predicted Viral2447Open in IMG/M
Ga0168692_115904All Organisms → cellular organisms → Bacteria1098Open in IMG/M
Ga0168692_121946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.760Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168692_100002Ga0168692_100002259F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDPDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCKDNFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKCYLIDQLAIS
Ga0168692_100320Ga0168692_10032028F056309RVRITVKGTKRTCLRRMPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVYFKD
Ga0168692_100542Ga0168692_10054220F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168692_100570Ga0168692_1005702F062845MEKTPFILHEKFRSDNNEQRKEHFQNKFERYIVDSLSDTAPSKSCA
Ga0168692_100780Ga0168692_1007806F097493MYKFYMKNGTAQFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIKHTDITFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
Ga0168692_100912Ga0168692_10091216F097493MKNGQAQFYERGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTDVTLEQPTAEQLEQIQSKTFDSMSDMKQHVQSVMSGDETMSQDEINAMLMLQIAELKAGVESE
Ga0168692_100955Ga0168692_1009553F087336MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0168692_100999Ga0168692_10099912F070093CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNFMEANQ
Ga0168692_102614Ga0168692_1026146F047125MDVVLLLMVLGVMLSGSWAADALDHMRKEILQQEGKRRGWWS
Ga0168692_104103Ga0168692_1041031F056309TCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0168692_107637Ga0168692_1076374F071325ALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168692_107730Ga0168692_1077302F097493MYKFYMKNGQARFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTDITLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLMLQIAELKAGVDGE
Ga0168692_115904Ga0168692_1159041F026489VAGGSRGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0168692_121946Ga0168692_1219461F097172KTSPTYLILFTKPKEGFIMKKNVLKKLMCAVLAAACVATAVVPAMANDVVTAEAATKKVTSAYRYHLEGSDKKGYPINGFSKSSFFKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKDNPRYESFIKFKAPKTGKYVVTLDNLQGTDDKSLRCMIYYGFYQISRTGKKYFLNDIEDSDTIGKYDMLYENNFLARLRTILDNYKAEHPEYTDVIEYDYNDYTSYVNSRSLDKIKFTTKLKKGQTYVYVIDNAL
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