NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029209

3300029209: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002611-17



Overview

Basic Information
IMG/M Taxon OID3300029209 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192938 | Ga0168673
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002611-17
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size139209946
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F052660Metagenome142N
F055715Metagenome138N
F067844Metagenome125N
F067845Metagenome125N
F068855Metagenome124N
F070093Metagenome123N
F071325Metagenome122N
F087335Metagenome110N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168673_100634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales30316Open in IMG/M
Ga0168673_100684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis28599Open in IMG/M
Ga0168673_100790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii25704Open in IMG/M
Ga0168673_101101All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales19412Open in IMG/M
Ga0168673_101192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena18013Open in IMG/M
Ga0168673_101754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii12739Open in IMG/M
Ga0168673_101847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales12172Open in IMG/M
Ga0168673_102017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium11075Open in IMG/M
Ga0168673_104708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4475Open in IMG/M
Ga0168673_106140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena3384Open in IMG/M
Ga0168673_124201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae815Open in IMG/M
Ga0168673_124948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes785Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168673_100634Ga0168673_1006344F068855VPIISKCPSSSVPTVEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0168673_100684Ga0168673_10068424F101355MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKKACACTLLWISDHFYKKLLPYVIFFFFKIYLKKIDFFQNIA
Ga0168673_100790Ga0168673_10079023F026489VRAAEGGSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168673_101101Ga0168673_1011011F071325FKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168673_101192Ga0168673_1011921F070093CRVSNFESLLLAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNSKLNPNLFQRI
Ga0168673_101754Ga0168673_1017548F026489LTPKENQKSASDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168673_101847Ga0168673_1018472F052660MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYGGILMGIALPIPSHRAKSHDFAYWWPVATGHSRSADALPGKSNF
Ga0168673_102017Ga0168673_10201714F087335MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL
Ga0168673_104708Ga0168673_1047083F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168673_106140Ga0168673_1061401F070093FRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS
Ga0168673_124201Ga0168673_1242012F055715LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0168673_124948Ga0168673_1249483F067844MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQ
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