NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029215

3300029215: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021239-113



Overview

Basic Information
IMG/M Taxon OID3300029215 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0193108 | Ga0167476
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021239-113
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size140679542
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Megamonas → Megamonas funiformis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F026489Metagenome197N
F047126Metagenome150N
F056682Metagenome137Y
F071325Metagenome122N
F074899Metagenome / Metatranscriptome119N
F076190Metagenome118Y
F078822Metagenome116N
F082887Metagenome / Metatranscriptome113Y
F089005Metagenome109N
F090515Metagenome108N
F092228Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0167476_100188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae92094Open in IMG/M
Ga0167476_100238All Organisms → cellular organisms → Bacteria75902Open in IMG/M
Ga0167476_100342All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii56627Open in IMG/M
Ga0167476_100521Not Available38989Open in IMG/M
Ga0167476_101079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales19079Open in IMG/M
Ga0167476_101317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii15704Open in IMG/M
Ga0167476_101514All Organisms → cellular organisms → Bacteria13254Open in IMG/M
Ga0167476_102063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae9093Open in IMG/M
Ga0167476_102307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7955Open in IMG/M
Ga0167476_102820All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis6194Open in IMG/M
Ga0167476_105039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3208Open in IMG/M
Ga0167476_105245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Megamonas → Megamonas funiformis3068Open in IMG/M
Ga0167476_110083All Organisms → cellular organisms → Bacteria1655Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0167476_100188Ga0167476_10018823F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0167476_100238Ga0167476_1002382F090515MIRSIRGACQEGVITCCKVGPKTTLQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0167476_100342Ga0167476_10034253F026489VAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0167476_100521Ga0167476_1005219F082887MEKIKKIAKYTTNVLAIIGALVAGINGVDGITIPYATQIIQIIAVLQGIIGTYLLTNKTLKGSE
Ga0167476_101079Ga0167476_1010791F071325SDSSIIISKVVLFVKHFFDIFLSLPNAFLEAFHLHAVQFPAAFLLVHRFYLAFEELLSCATAYL
Ga0167476_101317Ga0167476_10131717F089005LTKSKQRSIIALALLRLATSNEESKQALKVHRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQ
Ga0167476_101514Ga0167476_1015148F013656MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKKLNKLLGTPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL
Ga0167476_102063Ga0167476_1020631F076190ITIFVKNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0167476_102307Ga0167476_1023078F047126MANISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0167476_102820Ga0167476_1028201F078822KAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0167476_105039Ga0167476_1050391F074899MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSKKHRKLRFLVLFC
Ga0167476_105245Ga0167476_1052451F056682VAEKPHKQNIVKMQSRAGKVANQPIGQGEMYSASFGTFPLKNRTTFPIQEPRKIHEKQEV
Ga0167476_110083Ga0167476_1100833F071325SDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHALRFPAAFLLVHRFYLAFEELLSCATAYL
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