NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029218

3300029218: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012062-30



Overview

Basic Information
IMG/M Taxon OID3300029218 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192983 | Ga0168718
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012062-30
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size143730064
Sequencing Scaffolds22
Novel Protein Genes22
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F026489Metagenome197N
F047125Metagenome / Metatranscriptome150N
F047755Metagenome149Y
F052660Metagenome142N
F062845Metagenome130N
F067720Metagenome125Y
F067845Metagenome125N
F077405Metagenome117N
F078693Metagenome116N
F081453Metagenome114N
F087335Metagenome110N
F088920Metagenome109Y
F089053Metagenome109Y
F090515Metagenome108N
F092228Metagenome107N
F097493Metagenome104Y
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168718_100002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii746336Open in IMG/M
Ga0168718_100078All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis152581Open in IMG/M
Ga0168718_100113All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii120687Open in IMG/M
Ga0168718_100244All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae80555Open in IMG/M
Ga0168718_100348All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii59721Open in IMG/M
Ga0168718_100605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales32306Open in IMG/M
Ga0168718_101291All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides13608Open in IMG/M
Ga0168718_101302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia13536Open in IMG/M
Ga0168718_101403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium12412Open in IMG/M
Ga0168718_101602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes10769Open in IMG/M
Ga0168718_101607All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides10729Open in IMG/M
Ga0168718_102062All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii8261Open in IMG/M
Ga0168718_102129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii7980Open in IMG/M
Ga0168718_102270All Organisms → cellular organisms → Bacteria7470Open in IMG/M
Ga0168718_102784All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6149Open in IMG/M
Ga0168718_103325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5161Open in IMG/M
Ga0168718_104305All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4102Open in IMG/M
Ga0168718_105618All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3248Open in IMG/M
Ga0168718_105942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3091Open in IMG/M
Ga0168718_112923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1539Open in IMG/M
Ga0168718_120466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1005Open in IMG/M
Ga0168718_121366All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes965Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168718_100002Ga0168718_100002250F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDFVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0168718_100078Ga0168718_10007866F081453MYPFFLLAGENIVEKYISANPVCGTNIKAPELAVKGAPGRNCVQ
Ga0168718_100113Ga0168718_10011376F062845MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT
Ga0168718_100244Ga0168718_1002441F077405LLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK
Ga0168718_100348Ga0168718_10034842F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLEDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168718_100605Ga0168718_10060512F052660MCILRVLPKNTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS
Ga0168718_101291Ga0168718_1012911F099451KVIENLSDDYEIEMRIRRKLTDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE
Ga0168718_101302Ga0168718_10130212F067720MASTTYEHCGNVTAMYTAQEQFRDITKMVCARFRDLTKTYYFAVIGNMMRNAGQLPQPFWLGAACGGGSCSAAPCAART
Ga0168718_101403Ga0168718_10140313F087335MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCIMPCFYDAPLRKGLLYHLDDGTMLRIRPILNEAGEPELLIRCFTEETVEEMMEGVKP
Ga0168718_101602Ga0168718_10160211F013656MGKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL
Ga0168718_101607Ga0168718_1016074F099451MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLTDEDIIKLHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDK
Ga0168718_102062Ga0168718_1020628F026489VVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0168718_102129Ga0168718_1021291F089053CSSFGVRIGRVVDGCRPAKGCITKRLYVFANGQLKLSTAEEVNVKNMEVFL
Ga0168718_102270Ga0168718_1022705F013656XXXKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKIKIQKIILKANIYDI
Ga0168718_102784Ga0168718_1027843F097493MYKFYSKNGQAQFYEHGVEIDGTVYGIHTDRDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTDVTFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
Ga0168718_103325Ga0168718_1033256F013656MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKKLNKLLGAPTKENKIKRSIAGSTWNIALDDKTKIQKIILKANIYEL
Ga0168718_104305Ga0168718_1043053F047125MDVVLLLMVLGVMLSGFWAADALDYIRKEIIRQEGKRRGWWS
Ga0168718_105618Ga0168718_1056182F047755MEEDKVKNVINIIKDMNIKDKLRLAICMTQSKLSGLIYNTKENYEKFDAMLKEVDEEYRTTLINFGQSKYFNINFAMAKLMEMETT
Ga0168718_105942Ga0168718_1059423F078693MVLALVRGAERSFIQADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVEAQKC
Ga0168718_112923Ga0168718_1129232F088920VSARPHYYLAFGAGLILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQASLHQPWLSPYCLFKD
Ga0168718_120466Ga0168718_1204662F090515LGKQRHDPGIRGACQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0168718_121366Ga0168718_1213662F097493MYKFYMKNGTAYFYERGIEIDGIVYGIRADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDSE
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