NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029220

3300029220: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011710-39



Overview

Basic Information
IMG/M Taxon OID3300029220 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192972 | Ga0168707
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011710-39
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size134582277
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056309Metagenome137N
F057001Metagenome137Y
F058154Metagenome135N
F067720Metagenome125Y
F068856Metagenome124N
F070133Metagenome123N
F073574Metagenome120N
F074898Metagenome119N
F076190Metagenome118Y
F077320Metagenome117N
F080673Metagenome115N
F082714Metagenome113N
F082887Metagenome / Metatranscriptome113Y
F087213Metagenome110N
F091068Metagenome108N
F092227Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168707_100035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena140833Open in IMG/M
Ga0168707_100203All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes56844Open in IMG/M
Ga0168707_100602Not Available25096Open in IMG/M
Ga0168707_105177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium4042Open in IMG/M
Ga0168707_105653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3717Open in IMG/M
Ga0168707_106091All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3452Open in IMG/M
Ga0168707_106183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3399Open in IMG/M
Ga0168707_107905All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2725Open in IMG/M
Ga0168707_108628All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2519Open in IMG/M
Ga0168707_110718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2042Open in IMG/M
Ga0168707_117246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1309Open in IMG/M
Ga0168707_117891All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1263Open in IMG/M
Ga0168707_119923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1140Open in IMG/M
Ga0168707_121702All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1049Open in IMG/M
Ga0168707_125928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales875Open in IMG/M
Ga0168707_139605All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium573Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168707_100035Ga0168707_1000351F056309TVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0168707_100203Ga0168707_10020341F067720MSSTTYEHFVDTNKMFAAQEQFRNITKMVCVCFRGFTKTCHLGNAPVMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0168707_100602Ga0168707_1006023F082887MEKIKKIAKYTTNVLAILGALVAGINGVDGITIPYATQIIQIIAVLQGVIGTYLLSNKVINK
Ga0168707_105177Ga0168707_1051772F077320MKRKGMHRRRKWVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDVLPDNAFTAELPAEIDGRLSYIRDYSASGHYQIVWENVSAEAAESYLTVLLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTATPLPEWLADW
Ga0168707_105653Ga0168707_1056533F074898EICMPQMAEKTSPDAPPNCAVVPLTKRTKCCILYVAKAFVLYRKECFFMRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPETIGTIELTQLLDGLF
Ga0168707_106091Ga0168707_1060916F076190VTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL
Ga0168707_106183Ga0168707_1061833F092227MKEEKRKRILRVGCLILAGIFALSMLGSMVMMLLV
Ga0168707_107905Ga0168707_1079054F057001MPIQVPRVRANLMTNKELNKVQNEVKKSNEKTLTGAVKAWCNLFKSSKEINDILKENDIKVSKEVVPALVALAKDKEVIIQLCKEILPRVNNTFCAYKEVEREYYDKNDKDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR
Ga0168707_108628Ga0168707_1086282F070133MKRLLGLLLAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHAGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIGQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQYESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0168707_110718Ga0168707_1107182F058154MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMEERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIEN
Ga0168707_117246Ga0168707_1172462F073574MLLPTAVRPYAADVDGTASRVRCAIALNGSKDLRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDNRQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEELAAFANPDNMFTWVW
Ga0168707_117891Ga0168707_1178911F087213MKKFSSVLLAVLLIFSCWTAATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPKDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0168707_119923Ga0168707_1199232F068856MKRLTSILLALLMLVGMALAEETPDAALGDWYALNVDGTTECLTLREDGTFCYDSREGTWRKTTDGEYWLTYNIHDLPEVMERMVNSQAAEQDLTALLTETGLDVYYGSTAKGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMQMTYTPDKGERLAFCTIDGLTLIPGANLGDYPEGTSYPMTFEDGILSATIQMMVLVSSGTKETQEIEMDYYLTFFQTADGSLYATLRLSDVPDNPTTMFLLIPME
Ga0168707_121702Ga0168707_1217022F082714MVVGIRFAADAPVRTVLQSVLPIFPTVDVDFLVREYWVCTFGNGFPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQVEAVIKTLRKAVEIRSVEAVERET
Ga0168707_125928Ga0168707_1259282F091068MNEKNQHVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEA
Ga0168707_139605Ga0168707_1396052F080673MKLQDEALLYLRDNITKDEAYYILTTENEMTEVLMSKRKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMNDNKERIDFMFVYFMARIL
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