NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029243

3300029243: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012057-18



Overview

Basic Information
IMG/M Taxon OID3300029243 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192978 | Ga0168713
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012057-18
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size185445425
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042936Metagenome157N
F056682Metagenome137Y
F062845Metagenome130N
F067720Metagenome125Y
F074899Metagenome / Metatranscriptome119N
F081354Metagenome114Y
F084124Metagenome112Y
F087335Metagenome110N
F088921Metagenome109N
F089054Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168713_100101All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales116791Open in IMG/M
Ga0168713_100364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales56965Open in IMG/M
Ga0168713_101896All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes15286Open in IMG/M
Ga0168713_104089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6646Open in IMG/M
Ga0168713_108041All Organisms → cellular organisms → Bacteria3280Open in IMG/M
Ga0168713_110405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2514Open in IMG/M
Ga0168713_110707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2442Open in IMG/M
Ga0168713_118783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741388Open in IMG/M
Ga0168713_144036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae601Open in IMG/M
Ga0168713_146386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae573Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168713_100101Ga0168713_100101158F067720MASTTYDHFVDVNKMYAAQEQFRHVTKMVCGRFRDLTKTYHLGNVPVMVRNAGQLPQPFWLGTACGGGSCSAARCAART
Ga0168713_100364Ga0168713_10036429F084124LPFGGLNTTALAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0168713_101896Ga0168713_1018964F081354LVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAGCKNPLENGKAEVQILFEPLLTAISSMELPKNFEE
Ga0168713_104089Ga0168713_1040892F042936VWKPKEGIMKTSEIVDRGEDTIRNFEKVEQKGALTPPYLGKVYFRSRLRGKG
Ga0168713_108041Ga0168713_1080412F089054MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNIYLRYPNQEINNNHLHSEHIRLQIREILQIPLTDITIIDIISLP
Ga0168713_110405Ga0168713_1104053F062845MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRACA
Ga0168713_110707Ga0168713_1107073F056682MKMQSRAGKVANQPIERGKMYSASFGAFPSKNRITFPIQELGKIHNNQEVL
Ga0168713_118783Ga0168713_1187832F088921LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEMKKEKYINGEIYGEKNQIIVTNKSAMIRDKMWSK
Ga0168713_144036Ga0168713_1440362F074899KQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLATRTK
Ga0168713_146386Ga0168713_1463861F087335LLPENREEEQYAEAALNNILAGKTADTEICILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL
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