NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029313

3300029313: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_10_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029313 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133095 | Gp0281897 | Ga0242781
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_10_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size107627220
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059106Metagenome134N
F076190Metagenome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242781_100374All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae72457Open in IMG/M
Ga0242781_101151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales15601Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242781_100374Ga0242781_10037453F076190VRTAGGSITISAKNVFMAASRVSGRVWSLVRITVPNGLKYVKIRVEKPQNNSLYPYFQREPL
Ga0242781_101151Ga0242781_1011512F059106MHAIVWKIQVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVIIGAFV

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