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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029317 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133000 | Gp0276017 | Ga0239578 |
| Sample Name | Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T18 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Lawrence Berkeley National Laboratory |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 207903654 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Oil Enriched Seawater → Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → contaminated water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 24.74 | Long. (o) | -88.37 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027203 | Metagenome | 195 | Y |
| F101886 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0239578_1023041 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1542 | Open in IMG/M |
| Ga0239578_1034481 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 1151 | Open in IMG/M |
| Ga0239578_1036853 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 1094 | Open in IMG/M |
| Ga0239578_1071673 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 623 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0239578_1023041 | Ga0239578_10230412 | F101886 | MLKKIAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTVKKEHFLRASYLYLGFYLCDIHFSHYMSMEMNDPYFTPGALALVAIQIGFLFWAKIRINTANLALSN |
| Ga0239578_1034481 | Ga0239578_10344812 | F101886 | KKSAIIGFCLFNVVLFILIGIEVAAVTPERAMSEGVTQRIYASISTLDYIMAALWGAILYTILTAKTEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALSLVVIQAWFLYWAKNKINAANAAVPS |
| Ga0239578_1036853 | Ga0239578_10368532 | F101886 | MLKKTAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVAIQAGFLFWAKNRINAANLALSN |
| Ga0239578_1071493 | Ga0239578_10714932 | F027203 | SDIPKIPEARIVGLSRVNVPIEVERLAFTLNSLIPFSYNS |
| Ga0239578_1071673 | Ga0239578_10716732 | F101886 | IIGFCLFNVAFFIQIGIEVAAVTPEQAMLEGMTQRIYASISTLDYIMAALWGAILYSILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVVIQAGFLFWAKTRIHAVSSSLSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |