NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029321

3300029321: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-7_Run1



Overview

Basic Information
IMG/M Taxon OID3300029321 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133112 | Gp0282383 | Ga0243246
Sample NameHuman fecal microbial communities from healthy subjects in Hangzhou, China - HD-7_Run1
Sequencing StatusPermanent Draft
Sequencing CenterZhejiang University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size92843791
Sequencing Scaffolds3
Novel Protein Genes4
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067845Metagenome125N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243246_100296All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii46309Open in IMG/M
Ga0243246_101818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.5617Open in IMG/M
Ga0243246_102067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.4936Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243246_100296Ga0243246_10029623F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0243246_101818Ga0243246_1018182F097172MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYRPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243246_102067Ga0243246_1020671F097172DVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRAILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVAKDKFTTKLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEYRK
Ga0243246_102067Ga0243246_1020672F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVITVEAATKKVTSAYKYHLEGYDKKGYVMDGFSKASFCKDLNSLPAVKTGKTAINVPAVTSSVKSISKEKRNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLAKFRIIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK
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