NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029378

3300029378: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_27_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029378 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283139 | Ga0243978
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_27_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size254024651
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F050793Metagenome145N
F067720Metagenome125Y
F067845Metagenome125N
F071325Metagenome122N
F091068Metagenome108N
F092227Metagenome107N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243978_1000840All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella26018Open in IMG/M
Ga0243978_1001210All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales19967Open in IMG/M
Ga0243978_1002042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales12892Open in IMG/M
Ga0243978_1013412All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2608Open in IMG/M
Ga0243978_1018165All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2030Open in IMG/M
Ga0243978_1020335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1854Open in IMG/M
Ga0243978_1027196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1473Open in IMG/M
Ga0243978_1053277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales860Open in IMG/M
Ga0243978_1067331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales710Open in IMG/M
Ga0243978_1084927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii579Open in IMG/M
Ga0243978_1100126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243978_1000840Ga0243978_10008401F099269VGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0243978_1001210Ga0243978_10012101F071325CRSLGFGIVFRDFPSRLRFHKFQYCSIFKVLLALLLDSSIIISNVVLFVKHFFDIFLSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0243978_1002042Ga0243978_100204215F071325FGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVILFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243978_1013412Ga0243978_10134121F026489EAVDGRCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243978_1018165Ga0243978_10181651F026489RSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243978_1020335Ga0243978_10203352F067845MKHWKNLLVCLLAGVLVLGVLTACSGLGNVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243978_1027196Ga0243978_10271965F067720MASTTYRHLGDVTEMFAAQEQFRHITKMVCARFRGLTKTYHFADVVKMVTFCHRFAVIGSMVRNAGQLPQPFWLGAACGGGSRSAARCAART
Ga0243978_1053277Ga0243978_10532771F050793FCNGGGNMRKQVLVPENVEMADIHAIQTRIKKHNLLTTALLIPLFAGCALRESNETLGGIVFVLSIALMVLGFISGRDDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDRSRI
Ga0243978_1067331Ga0243978_10673311F091068MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIW
Ga0243978_1084927Ga0243978_10849271F092227VFMNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF
Ga0243978_1100126Ga0243978_11001261F092227HLAIMNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV
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