NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029384

3300029384: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_1_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029384 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283144 | Ga0243983
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_1_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size216567795
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F041208Metagenome160N
F050793Metagenome145N
F055715Metagenome138N
F067844Metagenome125N
F070093Metagenome123N
F072366Metagenome121N
F076189Metagenome118N
F088914Metagenome109N
F089054Metagenome109N
F091068Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243983_1001823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii15575Open in IMG/M
Ga0243983_1002761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10239Open in IMG/M
Ga0243983_1002768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena10210Open in IMG/M
Ga0243983_1006455All Organisms → cellular organisms → Bacteria4298Open in IMG/M
Ga0243983_1006949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3986Open in IMG/M
Ga0243983_1010189All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2714Open in IMG/M
Ga0243983_1013681All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2031Open in IMG/M
Ga0243983_1016645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1677Open in IMG/M
Ga0243983_1026403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1089Open in IMG/M
Ga0243983_1040881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales731Open in IMG/M
Ga0243983_1046211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii652Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243983_1001823Ga0243983_100182317F076189VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0243983_1002761Ga0243983_10027611F067844MNTLAAETASAWYLILNRKLQTLPIYTTQLSSHLPRPLMMGTQQVSAGAAVITPQHRSYRVPQGSPQVF
Ga0243983_1002768Ga0243983_10027681F070093GVCRVSNFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPN
Ga0243983_1006455Ga0243983_10064554F041208MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDSTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQTDDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG
Ga0243983_1006949Ga0243983_10069496F055715VNEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIQVGTAEILDN
Ga0243983_1010189Ga0243983_10101891F089054MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLSLREILQINLSDITIIDIIPLP
Ga0243983_1013681Ga0243983_10136811F091068MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIAXXXTGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0243983_1016645Ga0243983_10166453F072366MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQXXXXDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWTKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSDFDDAMTWYRDNGRKLLEARNKTNN
Ga0243983_1026403Ga0243983_10264032F050793MADIHAIQTRIKKHNLLTTALLIPLFAGCALRESNETLGGIVFVLSIALMVLGFISGRDDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDRSRI
Ga0243983_1040881Ga0243983_10408811F088914VCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0243983_1046211Ga0243983_10462112F026489TPKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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