NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029388

3300029388: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_29_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029388 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283159 | Ga0243998
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_29_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size186724973
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F076189Metagenome118N
F076190Metagenome118Y
F081354Metagenome114Y
F087335Metagenome110N
F088914Metagenome109N
F097172Metagenome / Metatranscriptome104Y
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243998_1000332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae56018Open in IMG/M
Ga0243998_1000401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae50017Open in IMG/M
Ga0243998_1002274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae11626Open in IMG/M
Ga0243998_1002517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens10452Open in IMG/M
Ga0243998_1009355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2765Open in IMG/M
Ga0243998_1009642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2685Open in IMG/M
Ga0243998_1011318All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2307Open in IMG/M
Ga0243998_1044979All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium627Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243998_1000332Ga0243998_100033213F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSTLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0243998_1000401Ga0243998_100040122F097172MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLAAYSFDMNIEYRK
Ga0243998_1000401Ga0243998_100040124F097172MKKNVLKKLMCAVLAAASVATAVVPAMADDVVTAEAATKKVISAYRYHLEGSDKNGYPVNGFSKAAFYKDLNSLPAVKTGKTTVNVPAVTSSIKSVSKEKDNPRYESFVKFKAPKTGKYVVTINNLQGTDDKSLRCMMYYGFYQATKMGKKYRIDIIGSDTVGKYDTLCENNYLARLRTILDNYKAEHPEYADVIEETYEYQKDLVNKYPVDKIKFTTQLKKGQTYVFVIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLAAYSFDMNIEYRK
Ga0243998_1002274Ga0243998_10022749F087335MPELYFNDGNFLPESREEEQSAETVLNIMLTGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIRCVTEETVEEVYQRVSNYD
Ga0243998_1002517Ga0243998_10025174F099269VHGVLLSVQVGEWLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0243998_1009355Ga0243998_10093554F076189MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL
Ga0243998_1009642Ga0243998_10096423F029444MGVSEQLTGFELEDLMSWTFSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF
Ga0243998_1011318Ga0243998_10113185F076190VTTAGGSITISVKNVFTAASRVSERVWPLVHITVPNGLKSVKIRVEKPQNNSLYPYFQREPL
Ga0243998_1044979Ga0243998_10449792F081354LVRQNQQSSAHNFVKDFSSISSDFSSDQPPKKGAGRKISLEYRKAEVQTLFGPLQAAISSMELPKNFENKKLPNPLR
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