Sample 3300029414

Overview

Basic Information
IMG/M Taxon OID	3300029414 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0282959 \| Ga0243798
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_2
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	191717031
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F056309

Metagenome

137

F059106

Metagenome

134

F070093

Metagenome

123

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243798_100067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	202960	Open in IMG/M
Ga0243798_100248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	109771	Open in IMG/M
Ga0243798_100757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	46931	Open in IMG/M
Ga0243798_100772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	46086	Open in IMG/M
Ga0243798_101558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	19976	Open in IMG/M
Ga0243798_110462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1966	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243798_100067

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis

202960

Open in IMG/M

Ga0243798_100248

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

109771

Open in IMG/M

Ga0243798_100757

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

46931

Open in IMG/M

Ga0243798_100772

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

46086

Open in IMG/M

Ga0243798_101558

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

19976

Open in IMG/M

Ga0243798_110462

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

1966

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243798_100067	Ga0243798_100067184	F059106	LQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0243798_100248	Ga0243798_1002481	F056309	RTCLRRTPSLSVVPLLLGVSDSLSVSYGMEPEQEALSIVSFKD
Ga0243798_100757	Ga0243798_10075744	F056309	RTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVFFKD
Ga0243798_100772	Ga0243798_10077244	F056309	TPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243798_101558	Ga0243798_1015581	F070093	CPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS
Ga0243798_110462	Ga0243798_1104621	F026592	QNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE

Scaffold ID

Protein ID

Family

Sequence

Ga0243798_100067

Ga0243798_100067184

F059106

LQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV

Ga0243798_100248

Ga0243798_1002481

F056309

RTCLRRTPSLSVVPLLLGVSDSLSVSYGMEPEQEALSIVSFKD

Ga0243798_100757

Ga0243798_10075744

F056309

RTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVFFKD

Ga0243798_100772

Ga0243798_10077244

F056309

TPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD

Ga0243798_101558

Ga0243798_1015581

F070093

CPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS

Ga0243798_110462

Ga0243798_1104621

F026592

QNRLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029414: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences